-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_658

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4807, 4961
Sorry, prediction snap_scaffold_658-snap.2-T1 fails validation.
(ATG)	 AA	2286-2313	GT	CCG
(CCC)	 AG	4807-4961	GT	CAG
-recovered snap_scaffold_658-snap.2-T1, initial, 2286, 2313
-recovered snap_scaffold_658-snap.2-T1, internal, 4807, 4961
Valid prediction for snap_scaffold_658-snap.1-T1
add_exon() Sorry, snap_scaffold_658-snap.1-T1 546-813-terminal-1 is invalid.
Valid prediction for Augustus_model.g40113.t1
add_exon() Sorry, Augustus_model.g40113.t1 546-813-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_60595-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60595-T1 546-813-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4219, 4536
Sorry, prediction pasa_asmbl_49504.p1 fails validation.
(ATG)	 CC	4219-4536	TT	CCT

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5093
-exon list size: 3


building trellis

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40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support