-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_657

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_657-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_60593-T1
Couldn't classify 4416, 4641
Sorry, prediction GlimmerHMM_glimmerT_60594-T1 fails validation.
(ATG)	 AC	3414-3486	GT	GTG
(ACG)	 AG	4416-4641	GT	CTG
-recovered GlimmerHMM_glimmerT_60594-T1, initial, 3414, 3486
-recovered GlimmerHMM_glimmerT_60594-T1, internal, 4416, 4641

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4833, 4948
Sorry, prediction Augustus_model.g40112.t1 fails validation.
(ATG)	 TG	4645-4673	GT	AGG
(GAC)	 AG	4833-4948	GT	CGG
-recovered Augustus_model.g40112.t1, initial, 4645, 4673
-recovered Augustus_model.g40112.t1, internal, 4833, 4948

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5094
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support