-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_655

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_655-snap.1-T1
Valid prediction for snap_scaffold_655-snap.2-T1
Couldn't classify 445, 472
Couldn't classify 584, 900
Sorry, prediction pasa_asmbl_49503.p1 fails validation.
(CCT)	 TT	445-472	GT	CGG
(GAA)	 AG	584-900	AA	AGA
Couldn't classify 1068, 1277
Sorry, prediction GlimmerHMM_glimmerT_60592-T1 fails validation.
(CTG)	 AG	1068-1277	GT	AAG
(TTG)	 AG	3610-4325	TG	GAT
-recovered GlimmerHMM_glimmerT_60592-T1, terminal, 3610, 4325
-recovered GlimmerHMM_glimmerT_60592-T1, internal, 1068, 1277
Couldn't classify 3610, 4098
Sorry, prediction Augustus_model.g40111.t1 fails validation.
(ATG)	 GG	775-931	GT	AGG
(CTG)	 AG	1068-1277	GT	AAG
(ATC)	 AG	3131-3157	GT	AGG
(TTG)	 AG	3610-4098	GT	AGG
-recovered Augustus_model.g40111.t1, initial, 775, 931
-recovered Augustus_model.g40111.t1, internal, 1068, 1277
-recovered Augustus_model.g40111.t1, internal, 3131, 3157
-recovered Augustus_model.g40111.t1, internal, 3610, 4098

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5113
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support