-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_653

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_653-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40108.t1
Valid prediction for snap_scaffold_653-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60587-T1
Valid prediction for GlimmerHMM_glimmerT_60586-T1
Valid prediction for CodingQuarry_transcript_55486-T1
Couldn't classify 4922, 5081
Sorry, prediction snap_scaffold_653-snap.1-T1 fails validation.
(ATG)	 AG	2736-2746	GT	TGG
(GCT)	 AG	2812-2852	GT	GTG
(CCG)	 AG	3192-3393	GT	AGG
(GAA)	 AG	4066-4121	GT	AGG
(GTG)	 AG	4815-4878	GT	GAG
(AGG)	 AG	4922-5081	GT	ATG
-recovered snap_scaffold_653-snap.1-T1, initial, 2736, 2746
-recovered snap_scaffold_653-snap.1-T1, terminal, 4066, 4121
-recovered snap_scaffold_653-snap.1-T1, internal, 2736, 2746
-recovered snap_scaffold_653-snap.1-T1, internal, 2812, 2852
-recovered snap_scaffold_653-snap.1-T1, internal, 3192, 3393
-recovered snap_scaffold_653-snap.1-T1, internal, 4066, 4121
-recovered snap_scaffold_653-snap.1-T1, internal, 4815, 4878
-recovered snap_scaffold_653-snap.1-T1, internal, 4922, 5081
Valid prediction for GlimmerHMM_glimmerT_60588-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60588-T1 876-1098-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5120
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support