-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_653 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_653-snap.3-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40108.t1 Valid prediction for snap_scaffold_653-snap.2-T1 Valid prediction for GlimmerHMM_glimmerT_60587-T1 Valid prediction for GlimmerHMM_glimmerT_60586-T1 Valid prediction for CodingQuarry_transcript_55486-T1 Couldn't classify 4922, 5081 Sorry, prediction snap_scaffold_653-snap.1-T1 fails validation. (ATG) AG 2736-2746 GT TGG (GCT) AG 2812-2852 GT GTG (CCG) AG 3192-3393 GT AGG (GAA) AG 4066-4121 GT AGG (GTG) AG 4815-4878 GT GAG (AGG) AG 4922-5081 GT ATG -recovered snap_scaffold_653-snap.1-T1, initial, 2736, 2746 -recovered snap_scaffold_653-snap.1-T1, terminal, 4066, 4121 -recovered snap_scaffold_653-snap.1-T1, internal, 2736, 2746 -recovered snap_scaffold_653-snap.1-T1, internal, 2812, 2852 -recovered snap_scaffold_653-snap.1-T1, internal, 3192, 3393 -recovered snap_scaffold_653-snap.1-T1, internal, 4066, 4121 -recovered snap_scaffold_653-snap.1-T1, internal, 4815, 4878 -recovered snap_scaffold_653-snap.1-T1, internal, 4922, 5081 Valid prediction for GlimmerHMM_glimmerT_60588-T1 add_exon() Sorry, GlimmerHMM_glimmerT_60588-T1 876-1098-terminal-1 is invalid. -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 5120 -exon list size: 25 building trellis 3.7 7.4 11.1 14.8 18.5 22.2 25.9 29.6 33.3 37.0 40.7 44.4 48.1 51.9 55.6 59.3 63.0 66.7 70.4 74.1 77.8 81.5 85.2 88.9 92.6 96.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support