-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_652

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 64, 154
Couldn't classify 4179, 4297
Sorry, prediction snap_scaffold_652-snap.2-T1 fails validation.
(CTG)	 AG	64-154	GT	ATG
(ACG)	 AG	3491-3835	GT	AGG
(GTT)	 AG	4179-4297	GT	TTG
-recovered snap_scaffold_652-snap.2-T1, internal, 64, 154
-recovered snap_scaffold_652-snap.2-T1, internal, 3491, 3835
-recovered snap_scaffold_652-snap.2-T1, internal, 4179, 4297

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 106, 183
Couldn't classify 4995, 5089
Sorry, prediction Augustus_model.g40107.t1 fails validation.
(GTC)	 AG	106-183	GT	AGG
(GAG)	 AG	507-572	GT	TGG
(GAC)	 AG	838-955	GT	GGG
(GTG)	 AG	1140-1218	GT	AGG
(GTA)	 AG	1576-1721	GT	AGG
(CTG)	 AG	2595-2824	GT	TGG
(GAG)	 AG	3004-3083	GT	AGG
(AGA)	 AG	4018-4093	GT	GAG
(ACA)	 AG	4593-4672	GT	AGG
(AGT)	 AG	4995-5089	GT	AGG
-recovered Augustus_model.g40107.t1, internal, 106, 183
-recovered Augustus_model.g40107.t1, internal, 507, 572
-recovered Augustus_model.g40107.t1, internal, 838, 955
-recovered Augustus_model.g40107.t1, internal, 1140, 1218
-recovered Augustus_model.g40107.t1, internal, 1576, 1721
-recovered Augustus_model.g40107.t1, internal, 2595, 2824
-recovered Augustus_model.g40107.t1, internal, 3004, 3083
-recovered Augustus_model.g40107.t1, internal, 4018, 4093
-recovered Augustus_model.g40107.t1, internal, 4593, 4672
-recovered Augustus_model.g40107.t1, internal, 4995, 5089
Couldn't classify 106, 183
Couldn't classify 4995, 5089
Sorry, prediction snap_scaffold_652-snap.1-T1 fails validation.
(GTC)	 AG	106-183	GT	AGG
(GAG)	 AG	507-572	GT	TGG
(GAC)	 AG	838-1108	GT	AAG
(GTG)	 AG	1140-1218	GT	AGG
(GTA)	 AG	1576-1721	GT	AGG
(CTG)	 AG	2595-2824	GT	TGG
(GAG)	 AG	3004-3083	GT	AGG
(AGA)	 AG	4018-4093	GT	GAG
(ACA)	 AG	4593-4672	GT	AGG
(AGT)	 AG	4995-5089	GT	AGG
-recovered snap_scaffold_652-snap.1-T1, internal, 106, 183
-recovered snap_scaffold_652-snap.1-T1, internal, 507, 572
-recovered snap_scaffold_652-snap.1-T1, internal, 838, 1108
-recovered snap_scaffold_652-snap.1-T1, internal, 1140, 1218
-recovered snap_scaffold_652-snap.1-T1, internal, 1576, 1721
-recovered snap_scaffold_652-snap.1-T1, internal, 2595, 2824
-recovered snap_scaffold_652-snap.1-T1, internal, 3004, 3083
-recovered snap_scaffold_652-snap.1-T1, internal, 4018, 4093
-recovered snap_scaffold_652-snap.1-T1, internal, 4593, 4672
-recovered snap_scaffold_652-snap.1-T1, internal, 4995, 5089
Valid prediction for GlimmerHMM_glimmerT_60584-T1
Couldn't classify 106, 183
Sorry, prediction GlimmerHMM_glimmerT_60585-T1 fails validation.
(GTC)	 AG	106-183	GT	AGG
(GAG)	 AG	507-572	GT	TGG
(CAA)	 AG	873-959	GA	GAG
-recovered GlimmerHMM_glimmerT_60585-T1, terminal, 873, 959
-recovered GlimmerHMM_glimmerT_60585-T1, internal, 106, 183
-recovered GlimmerHMM_glimmerT_60585-T1, internal, 507, 572
Couldn't classify 4995, 5097
Sorry, prediction pasa_asmbl_49499.p1 fails validation.
(ATG)	 CC	1160-1218	GT	AGG
(GTA)	 AG	1576-1721	GT	AGG
(CTG)	 AG	2595-2824	GT	TGG
(GAG)	 AG	3004-3083	GT	AGG
(AGA)	 AG	4018-4093	GT	GAG
(ACA)	 AG	4593-4672	GT	AGG
(AGT)	 AG	4995-5097	GG	GAG
-recovered pasa_asmbl_49499.p1, initial, 1160, 1218
-recovered pasa_asmbl_49499.p1, internal, 1576, 1721
-recovered pasa_asmbl_49499.p1, internal, 2595, 2824
-recovered pasa_asmbl_49499.p1, internal, 3004, 3083
-recovered pasa_asmbl_49499.p1, internal, 4018, 4093
-recovered pasa_asmbl_49499.p1, internal, 4593, 4672

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5024, rend_intergenic: 64  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5129
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5024, rend_intergenic: 64  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support