-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_650

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4805, 5143
Sorry, prediction snap_scaffold_650-snap.3-T1 fails validation.
(ATG)	 TC	4045-4127	GT	GGG
(CTG)	 AG	4805-5143	GT	GGG
-recovered snap_scaffold_650-snap.3-T1, initial, 4045, 4127
-recovered snap_scaffold_650-snap.3-T1, internal, 4805, 5143
Couldn't classify 166, 264
Sorry, prediction snap_scaffold_650-snap.2-T1 fails validation.
(GGT)	 AG	166-264	GT	CCG
(GAG)	 AG	3519-3870	AA	GAA
-recovered snap_scaffold_650-snap.2-T1, terminal, 3519, 3870
-recovered snap_scaffold_650-snap.2-T1, internal, 166, 264
Valid prediction for GlimmerHMM_glimmerT_60583-T1
Valid prediction for Augustus_model.g40106.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4882, 5007
Sorry, prediction snap_scaffold_650-snap.1-T1 fails validation.
(ATG)	 AG	1628-1822	GT	GTG
(AAT)	 AG	1857-1892	GT	AGG
(GAG)	 AG	4480-4691	GT	AGG
(GAG)	 AG	4882-5007	GT	CAG
-recovered snap_scaffold_650-snap.1-T1, initial, 1628, 1822
add_exon() Sorry, snap_scaffold_650-snap.1-T1 4480-4691-terminal-2 is invalid.
-recovered snap_scaffold_650-snap.1-T1, terminal, 4480, 4691
-recovered snap_scaffold_650-snap.1-T1, internal, 1628, 1822
-recovered snap_scaffold_650-snap.1-T1, internal, 1857, 1892
-recovered snap_scaffold_650-snap.1-T1, internal, 4480, 4691
-recovered snap_scaffold_650-snap.1-T1, internal, 4882, 5007

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3525, rend_intergenic: 166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5152
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3525, rend_intergenic: 166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support