-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_65

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_65-snap.3-T1
Valid prediction for snap_scaffold_65-snap.6-T1
Valid prediction for snap_scaffold_65-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_59654-T1
Valid prediction for GlimmerHMM_glimmerT_59656-T1
Valid prediction for Augustus_model.g39530.t1
Valid prediction for snap_scaffold_65-snap.8-T1
Valid prediction for GlimmerHMM_glimmerT_59655-T1
Valid prediction for snap_scaffold_65-snap.4-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59652-T1
Valid prediction for snap_scaffold_65-snap.7-T1
Valid prediction for GlimmerHMM_glimmerT_59653-T1
Valid prediction for snap_scaffold_65-snap.2-T1
Valid prediction for Augustus_model.g39528.t1
Valid prediction for Augustus_model.g39529.t1
Valid prediction for snap_scaffold_65-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10329, rend_intergenic: 3087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23635, rend_intergenic: 21529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24946, rend_intergenic: 23983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 47


building trellis

2.0    
4.1    
6.1    
8.2    
10.2    
12.2    
14.3    
16.3    
18.4    
20.4    
22.4    
24.5    
26.5    
28.6    
30.6    
32.7    
34.7    
36.7    
38.8    
40.8    
42.9    
44.9    
46.9    
49.0    
51.0    
53.1    
55.1    
57.1    
59.2    
61.2    
63.3    
65.3    
67.3    
69.4    
71.4    
73.5    
75.5    
77.6    
79.6    
81.6    
83.7    
85.7    
87.8    
89.8    
91.8    
93.9    
95.9    
98.0    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 10329, rend_intergenic: 3087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23635, rend_intergenic: 21529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24946, rend_intergenic: 23983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support