-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_649

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 426, 599
Sorry, prediction Augustus_model.g40104.t1 fails validation.
(GCT)	 AG	426-599	GT	AGG
(ACT)	 AG	1046-1219	GT	AGG
(GCT)	 AG	1425-1595	GT	AGG
(GCT)	 AG	1973-2131	GT	AAG
(TTT)	 AG	2226-2275	GT	GTG
(ACG)	 AG	2702-3273	TG	GAT
-recovered Augustus_model.g40104.t1, terminal, 2702, 3273
-recovered Augustus_model.g40104.t1, internal, 426, 599
-recovered Augustus_model.g40104.t1, internal, 1046, 1219
-recovered Augustus_model.g40104.t1, internal, 1425, 1595
-recovered Augustus_model.g40104.t1, internal, 1973, 2131
-recovered Augustus_model.g40104.t1, internal, 2226, 2275
Valid prediction for GlimmerHMM_glimmerT_60581-T1
Valid prediction for snap_scaffold_649-snap.1-T1
Valid prediction for snap_scaffold_649-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40105.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5153
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support