-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_644

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40101.t1
Couldn't classify 4760, 5195
Sorry, prediction snap_scaffold_644-snap.3-T1 fails validation.
(ATG)	 GA	2194-2386	GT	TTG
(GTG)	 AG	4249-4292	GT	AGG
(GAC)	 AG	4471-4637	GT	TTG
(AGG)	 AG	4760-5195	GT	GAG
-recovered snap_scaffold_644-snap.3-T1, initial, 2194, 2386
-recovered snap_scaffold_644-snap.3-T1, internal, 4249, 4292
-recovered snap_scaffold_644-snap.3-T1, internal, 4471, 4637
-recovered snap_scaffold_644-snap.3-T1, internal, 4760, 5195
Valid prediction for GlimmerHMM_glimmerT_60578-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60578-T1 4361-4773-terminal-1 is invalid.
Couldn't classify 424, 458
Sorry, prediction snap_scaffold_644-snap.1-T1 fails validation.
(AGC)	 AG	424-458	GT	AGG
(GAC)	 AG	668-864	GT	GGG
(AGA)	 AG	2040-2106	TC	AGT
-recovered snap_scaffold_644-snap.1-T1, terminal, 2040, 2106
-recovered snap_scaffold_644-snap.1-T1, internal, 424, 458
-recovered snap_scaffold_644-snap.1-T1, internal, 668, 864

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 471
Couldn't classify 2821, 3039
Sorry, prediction snap_scaffold_644-snap.2-T1 fails validation.
(CAC)	 AG	32-471	GT	TGG
(GGG)	 AG	482-504	GT	AGG
(AAC)	 AG	626-771	GT	AGG
(GAG)	 AG	1716-1841	GT	TGG
(CCT)	 AG	2821-3039	GT	CAG
-recovered snap_scaffold_644-snap.2-T1, internal, 32, 471
-recovered snap_scaffold_644-snap.2-T1, internal, 482, 504
-recovered snap_scaffold_644-snap.2-T1, internal, 626, 771
-recovered snap_scaffold_644-snap.2-T1, internal, 1716, 1841
-recovered snap_scaffold_644-snap.2-T1, internal, 2821, 3039
Sorry, intron length (9) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5172, rend_intergenic: 2194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5203
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5172, rend_intergenic: 2194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support