-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_643

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1194, 1301
Sorry, prediction snap_scaffold_643-snap.2-T1 fails validation.
(CAA)	 AG	1194-1301	GT	AAG
(GGT)	 AG	1520-1568	GT	AGG
(ATG)	 AG	1942-2037	GT	CGG
(ATA)	 AG	2620-2784	CG	GAC
-recovered snap_scaffold_643-snap.2-T1, initial, 1942, 2037
-recovered snap_scaffold_643-snap.2-T1, terminal, 2620, 2784
-recovered snap_scaffold_643-snap.2-T1, internal, 1194, 1301
-recovered snap_scaffold_643-snap.2-T1, internal, 1520, 1568
-recovered snap_scaffold_643-snap.2-T1, internal, 1942, 2037

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2390, 2664
Couldn't classify 5059, 5206
Sorry, prediction snap_scaffold_643-snap.1-T1 fails validation.
(TGA)	 AG	2390-2664	GT	AGG
(GTG)	 AG	3117-3289	GT	AGG
(AGA)	 AG	3743-3843	GT	CGG
(CAT)	 AG	3926-4091	GT	AGG
(AGA)	 AG	5059-5206	GT	TGG
-recovered snap_scaffold_643-snap.1-T1, internal, 2390, 2664
-recovered snap_scaffold_643-snap.1-T1, internal, 3117, 3289
-recovered snap_scaffold_643-snap.1-T1, internal, 3743, 3843
-recovered snap_scaffold_643-snap.1-T1, internal, 3926, 4091
-recovered snap_scaffold_643-snap.1-T1, internal, 5059, 5206
Couldn't classify 2390, 2664
Sorry, prediction GlimmerHMM_glimmerT_60577-T1 fails validation.
(TGA)	 AG	2390-2664	GT	AGG
(GGT)	 AG	3131-3172	GG	GAG
-recovered GlimmerHMM_glimmerT_60577-T1, terminal, 3131, 3172
-recovered GlimmerHMM_glimmerT_60577-T1, internal, 2390, 2664
Valid prediction for Augustus_model.g40100.t1
Couldn't classify 3926, 4092
Sorry, prediction pasa_asmbl_49490.p1 fails validation.
(ATG)	 CC	2473-2664	GT	AGG
(GTG)	 AG	3117-3289	GT	AGG
(AGA)	 AG	3743-3843	GT	CGG
(CAT)	 AG	3926-4092	TA	GGT
-recovered pasa_asmbl_49490.p1, initial, 2473, 2664
-recovered pasa_asmbl_49490.p1, internal, 3117, 3289
-recovered pasa_asmbl_49490.p1, internal, 3743, 3843

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2824, rend_intergenic: 1194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5213
-exon list size: 18


building trellis

5.0    
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15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2824, rend_intergenic: 1194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support