-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_642

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_642-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60576-T1
Couldn't classify 5165, 5222
Sorry, prediction snap_scaffold_642-snap.3-T1 fails validation.
(ATG)	 CC	3573-3706	GT	AAG
(CGA)	 AG	4924-5123	GT	TGG
(GTC)	 AG	5165-5222	GT	AGG
-recovered snap_scaffold_642-snap.3-T1, initial, 3573, 3706
-recovered snap_scaffold_642-snap.3-T1, internal, 4924, 5123
-recovered snap_scaffold_642-snap.3-T1, internal, 5165, 5222
Valid prediction for Augustus_model.g40099.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 48, 367
Couldn't classify 5089, 5146
Sorry, prediction snap_scaffold_642-snap.1-T1 fails validation.
(CCA)	 AG	48-367	GT	CCG
(GAC)	 AG	1723-1843	GT	GGG
(TAA)	 AG	5089-5146	GT	AAG
-recovered snap_scaffold_642-snap.1-T1, internal, 48, 367
-recovered snap_scaffold_642-snap.1-T1, internal, 1723, 1843
-recovered snap_scaffold_642-snap.1-T1, internal, 5089, 5146

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5177, rend_intergenic: 732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5224
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5177, rend_intergenic: 732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support