-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_634

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40094.t1
Couldn't classify 1386, 1443
Sorry, prediction snap_scaffold_634-snap.2-T1 fails validation.
(TCA)	 AG	1386-1443	GT	AGG
(GGA)	 AG	2520-2631	GT	AGG
(GAG)	 AG	3158-3306	GT	CAG
(GGT)	 AG	4883-4982	GA	GAG
-recovered snap_scaffold_634-snap.2-T1, terminal, 1386, 1443
-recovered snap_scaffold_634-snap.2-T1, terminal, 4883, 4982
-recovered snap_scaffold_634-snap.2-T1, internal, 1386, 1443
-recovered snap_scaffold_634-snap.2-T1, internal, 2520, 2631
-recovered snap_scaffold_634-snap.2-T1, internal, 3158, 3306
Valid prediction for GlimmerHMM_glimmerT_60568-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4999, 5138
Sorry, prediction snap_scaffold_634-snap.1-T1 fails validation.
(ATG)	 AG	3950-4091	GT	GAG
(GGA)	 AG	4999-5138	GT	CGG
-recovered snap_scaffold_634-snap.1-T1, initial, 3950, 4091
-recovered snap_scaffold_634-snap.1-T1, internal, 3950, 4091
-recovered snap_scaffold_634-snap.1-T1, internal, 4999, 5138
Valid prediction for GlimmerHMM_glimmerT_60567-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5255
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support