-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_632

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 655, 808
Sorry, prediction GlimmerHMM_glimmerT_60566-T1 fails validation.
(CAA)	 AG	655-808	GT	ATG
(GAG)	 AG	4777-4830	CG	AGC
-recovered GlimmerHMM_glimmerT_60566-T1, terminal, 4777, 4830
-recovered GlimmerHMM_glimmerT_60566-T1, internal, 655, 808
Couldn't classify 655, 855
Couldn't classify 5085, 5166
Sorry, prediction snap_scaffold_632-snap.1-T1 fails validation.
(CAA)	 AG	655-855	GT	GGG
(GAG)	 AG	4777-4874	GT	GGG
(CTC)	 AG	5085-5166	GT	CGG
-recovered snap_scaffold_632-snap.1-T1, internal, 655, 855
-recovered snap_scaffold_632-snap.1-T1, internal, 4777, 4874
-recovered snap_scaffold_632-snap.1-T1, internal, 5085, 5166

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5297
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support