-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_63

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_63-snap.2-T1
Valid prediction for Augustus_model.g39524.t1
Valid prediction for snap_scaffold_63-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_59649-T1
Valid prediction for Augustus_model.g39526.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39525.t1
Couldn't classify 24807, 24896
Sorry, prediction Augustus_model.g39523.t1 fails validation.
(ATG)	 CC	22270-22453	GT	TGG
(GTT)	 AG	23711-23823	GT	AGG
(GTC)	 AG	24807-24896	GT	AGG
-recovered Augustus_model.g39523.t1, initial, 22270, 22453
-recovered Augustus_model.g39523.t1, internal, 23711, 23823
-recovered Augustus_model.g39523.t1, internal, 24807, 24896
Couldn't classify 24807, 24839
Sorry, prediction pasa_asmbl_49482.p1 fails validation.
(ATG)	 TT	22261-22453	GT	TGG
(GTT)	 AG	23711-23823	GT	AGG
(GTC)	 AG	24807-24839	GG	TAG
-recovered pasa_asmbl_49482.p1, initial, 22261, 22453
-recovered pasa_asmbl_49482.p1, internal, 23711, 23823
Valid prediction for snap_scaffold_63-snap.3-T1
Valid prediction for snap_scaffold_63-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59648-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 6 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support