-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_628

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5111, 5223
Sorry, prediction snap_scaffold_628-snap.2-T1 fails validation.
(ATG)	 CC	3212-3257	GT	CGG
(CCG)	 AG	3293-3366	GT	CTG
(CCG)	 AG	3650-3835	GT	ACG
(GTG)	 AG	5111-5223	GT	GGG
-recovered snap_scaffold_628-snap.2-T1, initial, 3212, 3257
-recovered snap_scaffold_628-snap.2-T1, internal, 3293, 3366
-recovered snap_scaffold_628-snap.2-T1, internal, 3650, 3835
-recovered snap_scaffold_628-snap.2-T1, internal, 5111, 5223

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40092.t1
Couldn't classify 539, 604
Sorry, prediction GlimmerHMM_glimmerT_60563-T1 fails validation.
(GCA)	 AG	539-604	GT	CCG
(GGC)	 AG	4433-4876	AG	AGA
-recovered GlimmerHMM_glimmerT_60563-T1, terminal, 4433, 4876
-recovered GlimmerHMM_glimmerT_60563-T1, internal, 539, 604
Couldn't classify 775, 929
Sorry, prediction snap_scaffold_628-snap.3-T1 fails validation.
(CGT)	 AG	775-929	GT	AAG
(CCA)	 AG	1522-1614	CA	GAC
-recovered snap_scaffold_628-snap.3-T1, terminal, 1522, 1614
-recovered snap_scaffold_628-snap.3-T1, internal, 775, 929
Couldn't classify 4433, 4821
Sorry, prediction snap_scaffold_628-snap.1-T1 fails validation.
(ATG)	 CA	1627-1659	GT	AGG
(AAG)	 AG	2022-2179	GT	GTG
(CCT)	 AG	4287-4404	GT	TGG
(GGC)	 AG	4433-4821	GT	ACG
-recovered snap_scaffold_628-snap.1-T1, initial, 1627, 1659
-recovered snap_scaffold_628-snap.1-T1, internal, 2022, 2179
-recovered snap_scaffold_628-snap.1-T1, internal, 4287, 4404
-recovered snap_scaffold_628-snap.1-T1, internal, 4433, 4821

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3696, rend_intergenic: 3212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5223, rend_intergenic: 3709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5322
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3696, rend_intergenic: 3212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5223, rend_intergenic: 3709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support