-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_627

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4138, 4482
Sorry, prediction snap_scaffold_627-snap.1-T1 fails validation.
(ATG)	 AC	116-655	GT	CCG
(GAC)	 AG	3294-3389	GT	CAG
(GAT)	 AG	4138-4482	GT	CGG
-recovered snap_scaffold_627-snap.1-T1, initial, 116, 655
-recovered snap_scaffold_627-snap.1-T1, internal, 3294, 3389
-recovered snap_scaffold_627-snap.1-T1, internal, 4138, 4482

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1872, 2037
Couldn't classify 3003, 3089
Sorry, prediction pasa_asmbl_49480.p1 fails validation.
(CTG)	 GT	1872-2037	GT	AGG
(AGT)	 AG	2548-2636	GT	AGG
(GTC)	 AG	3003-3089	GT	AGG
-recovered pasa_asmbl_49480.p1, internal, 2548, 2636
-recovered pasa_asmbl_49480.p1, internal, 3003, 3089
Couldn't classify 150, 211
Couldn't classify 4661, 4729
Sorry, prediction snap_scaffold_627-snap.2-T1 fails validation.
(AGT)	 AG	150-211	GT	AGG
(CTG)	 AG	1172-1258	GT	GGG
(GGA)	 AG	1851-2037	GT	AGG
(AGT)	 AG	2548-2636	GT	AGG
(GTC)	 AG	3003-3089	GT	AGG
(GCA)	 AG	4661-4729	GT	TCG
-recovered snap_scaffold_627-snap.2-T1, internal, 150, 211
-recovered snap_scaffold_627-snap.2-T1, internal, 1172, 1258
-recovered snap_scaffold_627-snap.2-T1, internal, 1851, 2037
-recovered snap_scaffold_627-snap.2-T1, internal, 2548, 2636
-recovered snap_scaffold_627-snap.2-T1, internal, 3003, 3089
-recovered snap_scaffold_627-snap.2-T1, internal, 4661, 4729
Couldn't classify 150, 211
Sorry, prediction GlimmerHMM_glimmerT_60562-T1 fails validation.
(AGT)	 AG	150-211	GT	AGG
(CTG)	 AG	1172-1283	GT	ATG
(GCC)	 AG	1834-2037	GT	AGG
(GTC)	 AG	3003-3076	GG	GAG
-recovered GlimmerHMM_glimmerT_60562-T1, terminal, 3003, 3076
-recovered GlimmerHMM_glimmerT_60562-T1, internal, 150, 211
-recovered GlimmerHMM_glimmerT_60562-T1, internal, 1172, 1283
-recovered GlimmerHMM_glimmerT_60562-T1, internal, 1834, 2037
Couldn't classify 150, 211
Couldn't classify 5236, 5323
Sorry, prediction Augustus_model.g40091.t1 fails validation.
(AGT)	 AG	150-211	GT	AGG
(CTG)	 AG	1172-1283	GT	ATG
(GCC)	 AG	1834-2037	GT	AGG
(AGT)	 AG	2548-2636	GT	AGG
(GTC)	 AG	3003-3089	GT	AGG
(GCA)	 AG	4661-4793	GT	CTG
(GCC)	 AG	5236-5323		GA
-recovered Augustus_model.g40091.t1, internal, 150, 211
-recovered Augustus_model.g40091.t1, internal, 1172, 1283
-recovered Augustus_model.g40091.t1, internal, 1834, 2037
-recovered Augustus_model.g40091.t1, internal, 2548, 2636
-recovered Augustus_model.g40091.t1, internal, 3003, 3089
-recovered Augustus_model.g40091.t1, internal, 4661, 4793

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4482, rend_intergenic: 595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5323
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4482, rend_intergenic: 595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support