-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_625

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 409, 534
Sorry, prediction snap_scaffold_625-snap.1-T1 fails validation.
(CTC)	 AG	409-534	GT	GGG
(GAT)	 AG	3945-3999	AA	AGA
-recovered snap_scaffold_625-snap.1-T1, terminal, 3945, 3999
-recovered snap_scaffold_625-snap.1-T1, internal, 409, 534

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 483, 500
Sorry, prediction snap_scaffold_625-snap.3-T1 fails validation.
(CTC)	 AG	483-500	GT	AAG
(AGA)	 AG	2155-2520	AA	GAA
-recovered snap_scaffold_625-snap.3-T1, terminal, 2155, 2520
-recovered snap_scaffold_625-snap.3-T1, internal, 483, 500
Couldn't classify 4831, 4917
Sorry, prediction snap_scaffold_625-snap.2-T1 fails validation.
(ATG)	 AC	3058-3168	GT	TTG
(GTG)	 AG	4831-4917	GT	TTG
-recovered snap_scaffold_625-snap.2-T1, initial, 3058, 3168
-recovered snap_scaffold_625-snap.2-T1, internal, 4831, 4917

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3999, rend_intergenic: 423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5339
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3999, rend_intergenic: 423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support