-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_624

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_624-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 260, 382
Sorry, prediction GlimmerHMM_glimmerT_60560-T1 fails validation.
(CGT)	 AG	260-382	GT	CAG
(GCT)	 AG	3982-4069	GC	AAG
-recovered GlimmerHMM_glimmerT_60560-T1, terminal, 3982, 4069
-recovered GlimmerHMM_glimmerT_60560-T1, internal, 260, 382
-recovered GlimmerHMM_glimmerT_60560-T1, internal, 3982, 4069
Couldn't classify 260, 382
Sorry, prediction snap_scaffold_624-snap.3-T1 fails validation.
(CGT)	 AG	260-382	GT	CAG
(TCT)	 AG	1174-1234	GA	GAG
-recovered snap_scaffold_624-snap.3-T1, terminal, 1174, 1234
-recovered snap_scaffold_624-snap.3-T1, internal, 260, 382
Couldn't classify 4204, 4310
Sorry, prediction snap_scaffold_624-snap.1-T1 fails validation.
(ATG)	 GG	2373-2394	GT	TAG
(GCT)	 AG	3234-3510	GT	AGG
(GCT)	 AG	3982-4036	GT	CAG
(CCT)	 AG	4204-4310	GT	AGG
-recovered snap_scaffold_624-snap.1-T1, initial, 2373, 2394
-recovered snap_scaffold_624-snap.1-T1, internal, 3234, 3510
-recovered snap_scaffold_624-snap.1-T1, internal, 3982, 4036
-recovered snap_scaffold_624-snap.1-T1, internal, 4204, 4310

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2978, rend_intergenic: 1584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5114, rend_intergenic: 4117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5350
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2978, rend_intergenic: 1584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5114, rend_intergenic: 4117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support