-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_623

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_623-snap.2-T1
add_exon() Sorry, snap_scaffold_623-snap.2-T1 1849-2090-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 414, 581
Sorry, prediction GlimmerHMM_glimmerT_60559-T1 fails validation.
(GTG)	 AG	414-581	GT	AGG
(GAT)	 AG	1562-1777	GT	CAG
(GGC)	 AG	2022-2177	AA	GAA
-recovered GlimmerHMM_glimmerT_60559-T1, terminal, 2022, 2177
-recovered GlimmerHMM_glimmerT_60559-T1, internal, 414, 581
-recovered GlimmerHMM_glimmerT_60559-T1, internal, 1562, 1777
Couldn't classify 414, 581
Sorry, prediction Augustus_model.g40089.t1 fails validation.
(GTG)	 AG	414-581	GT	AGG
(GAT)	 AG	1562-1777	GT	CAG
(GGC)	 AG	2022-2169	GT	AGG
(GTC)	 AG	3801-3937	GT	AGG
(TCC)	 AG	5079-5138	CC	GAC
-recovered Augustus_model.g40089.t1, terminal, 5079, 5138
-recovered Augustus_model.g40089.t1, internal, 414, 581
-recovered Augustus_model.g40089.t1, internal, 1562, 1777
-recovered Augustus_model.g40089.t1, internal, 2022, 2169
-recovered Augustus_model.g40089.t1, internal, 3801, 3937
Couldn't classify 414, 581
Sorry, prediction snap_scaffold_623-snap.1-T1 fails validation.
(GTG)	 AG	414-581	GT	AGG
(GAT)	 AG	1562-1777	GT	CAG
(GGC)	 AG	2022-2169	GT	AGG
(GTC)	 AG	3801-3937	GT	AGG
(TCC)	 AG	5079-5138	CC	GAC
-recovered snap_scaffold_623-snap.1-T1, terminal, 5079, 5138
-recovered snap_scaffold_623-snap.1-T1, internal, 414, 581
-recovered snap_scaffold_623-snap.1-T1, internal, 1562, 1777
-recovered snap_scaffold_623-snap.1-T1, internal, 2022, 2169
-recovered snap_scaffold_623-snap.1-T1, internal, 3801, 3937

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4938, rend_intergenic: 1849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5351
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4938, rend_intergenic: 1849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support