-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_621

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1626, 1899
Sorry, prediction Augustus_model.g40088.t1 fails validation.
(ACC)	 AG	1626-1899	GT	AGG
(GAA)	 AG	2482-2514	GT	AGG
-recovered Augustus_model.g40088.t1, terminal, 2482, 2514
-recovered Augustus_model.g40088.t1, internal, 1626, 1899
-recovered Augustus_model.g40088.t1, internal, 2482, 2514
Couldn't classify 1626, 1899
Couldn't classify 4805, 4833
Sorry, prediction snap_scaffold_621-snap.1-T1 fails validation.
(ACC)	 AG	1626-1899	GT	AGG
(GTA)	 AG	2701-2752	GT	CAG
(GCA)	 AG	2894-2955	GT	AGG
(AGA)	 AG	4805-4833	GT	AAG
-recovered snap_scaffold_621-snap.1-T1, internal, 1626, 1899
-recovered snap_scaffold_621-snap.1-T1, internal, 2701, 2752
-recovered snap_scaffold_621-snap.1-T1, internal, 2894, 2955
-recovered snap_scaffold_621-snap.1-T1, internal, 4805, 4833
Valid prediction for GlimmerHMM_glimmerT_60557-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60557-T1 1626-1935-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5361
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support