-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_62 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for pasa_asmbl_49475.p1 Valid prediction for Augustus_model.g39519.t1 Valid prediction for Augustus_model.g39522.t1 Valid prediction for GlimmerHMM_glimmerT_59638-T1 Valid prediction for Augustus_model.g39518.t1 Valid prediction for snap_scaffold_62-snap.4-T1 Couldn't classify 24610, 24694 Sorry, prediction GlimmerHMM_glimmerT_59647-T1 fails validation. (ATG) CC 22819-22853 GT TGG (TGG) AG 24610-24694 GT AGG -recovered GlimmerHMM_glimmerT_59647-T1, initial, 22819, 22853 -recovered GlimmerHMM_glimmerT_59647-T1, internal, 24610, 24694 Valid prediction for GlimmerHMM_glimmerT_59643-T1 Couldn't classify 3749, 3847 Couldn't classify 4976, 4987 Sorry, prediction pasa_asmbl_49472.p1 fails validation. (CTG) AC 3749-3847 GT AGG (TCT) AG 3981-4123 GT AGG (TCA) AG 4397-4508 GT GGG (AGA) AG 4976-4987 GA AGG -recovered pasa_asmbl_49472.p1, internal, 3981, 4123 -recovered pasa_asmbl_49472.p1, internal, 4397, 4508 Valid prediction for GlimmerHMM_glimmerT_59641-T1 Valid prediction for Augustus_model.g39521.t1 Valid prediction for snap_scaffold_62-snap.10-T1 Couldn't classify 10683, 10700 Couldn't classify 13483, 13593 Sorry, prediction pasa_asmbl_49474.p1 fails validation. (CTG) AC 10683-10700 GT AGG (GTG) AG 10811-10996 GT AGG (GCT) AG 11103-11316 GT AGG (GAA) AG 12149-12283 GT TGG (ACT) AG 12854-12972 GT AAG (ATA) AG 13240-13353 GT AGG (GTC) AG 13483-13593 GT AGG -recovered pasa_asmbl_49474.p1, internal, 10811, 10996 -recovered pasa_asmbl_49474.p1, internal, 11103, 11316 -recovered pasa_asmbl_49474.p1, internal, 12149, 12283 -recovered pasa_asmbl_49474.p1, internal, 12854, 12972 -recovered pasa_asmbl_49474.p1, internal, 13240, 13353 -recovered pasa_asmbl_49474.p1, internal, 13483, 13593 Valid prediction for GlimmerHMM_glimmerT_59646-T1 Valid prediction for snap_scaffold_62-snap.11-T1 Valid prediction for Augustus_model.g39516.t1 Couldn't classify 3285, 3490 Sorry, prediction snap_scaffold_62-snap.2-T1 fails validation. (GAG) AG 3285-3490 GT AGG (GGG) AG 3678-3847 GT AGG (TCT) AG 3981-4123 GT AGG (TCA) AG 4397-4508 GT GGG (ATG) AG 5458-5516 GT CTG (AGA) AG 5750-5842 GT CGG (CTG) AG 5933-6085 GT AGG (GAC) AG 6305-6454 GT TGG (GTA) AG 6609-6692 GT TGG (GCT) AG 7396-7477 GT CAG (ACT) AG 8183-8542 CC GAC -recovered snap_scaffold_62-snap.2-T1, initial, 5458, 5516 add_exon() Sorry, snap_scaffold_62-snap.2-T1 3285-3490-terminal-2 is invalid. -recovered snap_scaffold_62-snap.2-T1, terminal, 3285, 3490 -recovered snap_scaffold_62-snap.2-T1, terminal, 8183, 8542 -recovered snap_scaffold_62-snap.2-T1, internal, 3285, 3490 -recovered snap_scaffold_62-snap.2-T1, internal, 3678, 3847 -recovered snap_scaffold_62-snap.2-T1, internal, 3981, 4123 -recovered snap_scaffold_62-snap.2-T1, internal, 4397, 4508 -recovered snap_scaffold_62-snap.2-T1, internal, 5458, 5516 -recovered snap_scaffold_62-snap.2-T1, internal, 5750, 5842 -recovered snap_scaffold_62-snap.2-T1, internal, 5933, 6085 -recovered snap_scaffold_62-snap.2-T1, internal, 6305, 6454 -recovered snap_scaffold_62-snap.2-T1, internal, 6609, 6692 -recovered snap_scaffold_62-snap.2-T1, internal, 7396, 7477 Valid prediction for GlimmerHMM_glimmerT_59645-T1 Valid prediction for GlimmerHMM_glimmerT_59640-T1 Couldn't classify 5479, 5516 Sorry, prediction pasa_asmbl_49473.p1 fails validation. (CAA) GT 5479-5516 GT CTG (AGA) AG 5750-5842 GT CGG (CTG) AG 5933-6085 GT AGG (GAC) AG 6305-6454 GT TGG (GTA) AG 6609-6696 GT GAG -recovered pasa_asmbl_49473.p1, terminal, 6609, 6696 -recovered pasa_asmbl_49473.p1, internal, 5750, 5842 -recovered pasa_asmbl_49473.p1, internal, 5933, 6085 -recovered pasa_asmbl_49473.p1, internal, 6305, 6454 -recovered pasa_asmbl_49473.p1, internal, 6609, 6696 Valid prediction for GlimmerHMM_glimmerT_59637-T1 Valid prediction for snap_scaffold_62-snap.12-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_62-snap.5-T1 Valid prediction for snap_scaffold_62-snap.9-T1 Valid prediction for GlimmerHMM_glimmerT_59642-T1 Valid prediction for Augustus_model.g39520.t1 Valid prediction for snap_scaffold_62-snap.8-T1 Valid prediction for snap_scaffold_62-snap.6-T1 Valid prediction for GlimmerHMM_glimmerT_59639-T1 Valid prediction for GlimmerHMM_glimmerT_59644-T1 Valid prediction for Augustus_model.g39517.t1 Valid prediction for snap_scaffold_62-snap.7-T1 Valid prediction for snap_scaffold_62-snap.3-T1 Valid prediction for snap_scaffold_62-snap.1-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8600, rend_intergenic: 3285 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12899, rend_intergenic: 9324 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23289, rend_intergenic: 20253 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 25000 -exon list size: 108 building trellis 0.9 1.8 2.7 3.6 4.5 5.5 6.4 7.3 8.2 9.1 10.0 10.9 11.8 12.7 13.6 14.5 15.5 16.4 17.3 18.2 19.1 20.0 20.9 21.8 22.7 23.6 24.5 25.5 26.4 27.3 28.2 29.1 30.0 30.9 31.8 32.7 33.6 34.5 35.5 36.4 37.3 38.2 39.1 40.0 40.9 41.8 42.7 43.6 44.5 45.5 46.4 47.3 48.2 49.1 50.0 50.9 51.8 52.7 53.6 54.5 55.5 56.4 57.3 58.2 59.1 60.0 60.9 61.8 62.7 63.6 64.5 65.5 66.4 67.3 68.2 69.1 70.0 70.9 71.8 72.7 73.6 74.5 75.5 76.4 77.3 78.2 79.1 80.0 80.9 81.8 82.7 83.6 84.5 85.5 86.4 87.3 88.2 89.1 90.0 90.9 91.8 92.7 93.6 94.5 95.5 96.4 97.3 98.2 99.1 -found 12 predictions from path traversal Error with prediction: snap lend_intergenic: 8600, rend_intergenic: 3285 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12899, rend_intergenic: 9324 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23289, rend_intergenic: 20253 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 11 predictions persist after filtering for low support