-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_619

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 517, 708
Sorry, prediction snap_scaffold_619-snap.2-T1 fails validation.
(GTC)	 AG	517-708	GT	GCG
(AGG)	 AG	1996-2074	GT	ATG
(CAT)	 AG	4432-4475	TT	AAT
-recovered snap_scaffold_619-snap.2-T1, terminal, 4432, 4475
-recovered snap_scaffold_619-snap.2-T1, internal, 517, 708
-recovered snap_scaffold_619-snap.2-T1, internal, 1996, 2074

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60555-T1
Valid prediction for GlimmerHMM_glimmerT_60554-T1
Couldn't classify 4836, 4978
Sorry, prediction snap_scaffold_619-snap.1-T1 fails validation.
(ATG)	 GC	860-965	GT	CGG
(CGA)	 AG	4836-4978	GT	ATG
-recovered snap_scaffold_619-snap.1-T1, initial, 860, 965
-recovered snap_scaffold_619-snap.1-T1, internal, 4836, 4978

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4506, rend_intergenic: 517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5365
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4506, rend_intergenic: 517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support