-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_618

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4262, 4612
Sorry, prediction snap_scaffold_618-snap.1-T1 fails validation.
(ATG)	 TC	320-353	GT	AGG
(CAT)	 AG	1260-1371	GT	GGG
(ACC)	 AG	4262-4612	GT	CAG
-recovered snap_scaffold_618-snap.1-T1, initial, 320, 353
-recovered snap_scaffold_618-snap.1-T1, internal, 1260, 1371
-recovered snap_scaffold_618-snap.1-T1, internal, 4262, 4612
Valid prediction for GlimmerHMM_glimmerT_60552-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1023, 1103
Sorry, prediction Augustus_model.g40084.t1 fails validation.
(GGC)	 AG	1023-1103	GT	CGG
(GGT)	 AG	1555-1664	GT	AGG
(GGC)	 AG	2065-2146	GT	AGG
(GTG)	 AG	3483-3599	GT	AGG
(GCG)	 AG	3894-4121	GG	GAG
-recovered Augustus_model.g40084.t1, terminal, 3894, 4121
-recovered Augustus_model.g40084.t1, internal, 1023, 1103
-recovered Augustus_model.g40084.t1, internal, 1555, 1664
-recovered Augustus_model.g40084.t1, internal, 2065, 2146
-recovered Augustus_model.g40084.t1, internal, 3483, 3599
Couldn't classify 752, 1103
Couldn't classify 3894, 4117
Sorry, prediction snap_scaffold_618-snap.2-T1 fails validation.
(TAC)	 AG	752-1103	GT	CGG
(GGT)	 AG	1555-1664	GT	AGG
(GGC)	 AG	2065-2146	GT	AGG
(GCG)	 AG	3894-4117	GT	AGG
-recovered snap_scaffold_618-snap.2-T1, internal, 752, 1103
-recovered snap_scaffold_618-snap.2-T1, internal, 1555, 1664
-recovered snap_scaffold_618-snap.2-T1, internal, 2065, 2146
-recovered snap_scaffold_618-snap.2-T1, internal, 3894, 4117
Valid prediction for GlimmerHMM_glimmerT_60551-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4612, rend_intergenic: 1250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5366
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4612, rend_intergenic: 1250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support