-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_616

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3963, 3976
Couldn't classify 4955, 5093
Sorry, prediction pasa_asmbl_49469.p1 fails validation.
(CTC)	 AC	3963-3976	GT	AGG
(AGA)	 AG	4462-4579	GT	GGG
(AAG)	 AG	4741-4862	GT	GGG
(GAA)	 AG	4955-5093	CC	CCC
-recovered pasa_asmbl_49469.p1, internal, 4462, 4579
-recovered pasa_asmbl_49469.p1, internal, 4741, 4862
Couldn't classify 4955, 5113
Sorry, prediction GlimmerHMM_glimmerT_60549-T1 fails validation.
(ATG)	 CG	704-851	GT	CGG
(TGT)	 AG	3823-3976	GT	AGG
(AGA)	 AG	4462-4579	GT	GGG
(AAG)	 AG	4741-4862	GT	GGG
(GAA)	 AG	4955-5113	GT	GGG
-recovered GlimmerHMM_glimmerT_60549-T1, initial, 704, 851
-recovered GlimmerHMM_glimmerT_60549-T1, internal, 3823, 3976
-recovered GlimmerHMM_glimmerT_60549-T1, internal, 4462, 4579
-recovered GlimmerHMM_glimmerT_60549-T1, internal, 4741, 4862
-recovered GlimmerHMM_glimmerT_60549-T1, internal, 4955, 5113
Couldn't classify 482, 617
Sorry, prediction snap_scaffold_616-snap.1-T1 fails validation.
(CCG)	 AG	482-617	GT	TAG
(GTA)	 AG	1631-1765	CT	GAC
-recovered snap_scaffold_616-snap.1-T1, terminal, 1631, 1765
-recovered snap_scaffold_616-snap.1-T1, internal, 482, 617
Couldn't classify 4955, 5113
Sorry, prediction snap_scaffold_616-snap.2-T1 fails validation.
(ATG)	 GG	2531-2616	GT	AGG
(TTG)	 AG	2785-2912	GT	AGG
(TGT)	 AG	3823-3976	GT	AGG
(AGA)	 AG	4462-4579	GT	GGG
(AAG)	 AG	4741-4862	GT	GGG
(GAA)	 AG	4955-5113	GT	GGG
-recovered snap_scaffold_616-snap.2-T1, initial, 2531, 2616
-recovered snap_scaffold_616-snap.2-T1, terminal, 2785, 2912
-recovered snap_scaffold_616-snap.2-T1, internal, 2785, 2912
-recovered snap_scaffold_616-snap.2-T1, internal, 3823, 3976
-recovered snap_scaffold_616-snap.2-T1, internal, 4462, 4579
-recovered snap_scaffold_616-snap.2-T1, internal, 4741, 4862
-recovered snap_scaffold_616-snap.2-T1, internal, 4955, 5113
Valid prediction for Augustus_model.g40082.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5367
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support