-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_613

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60546-T1
Valid prediction for snap_scaffold_613-snap.2-T1
Couldn't classify 3498, 3947
Sorry, prediction snap_scaffold_613-snap.1-T1 fails validation.
(ATG)	 AC	1522-1895	GT	AGG
(AGA)	 AG	3498-3947	GT	GAG
-recovered snap_scaffold_613-snap.1-T1, initial, 1522, 1895
-recovered snap_scaffold_613-snap.1-T1, internal, 3498, 3947

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5389
-exon list size: 3


building trellis

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40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support