-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_612

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_612-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4553, 4703
Couldn't classify 5248, 5417
Sorry, prediction pasa_asmbl_49464.p1 fails validation.
(ATC)	 AG	4553-4703	GT	CGG
(GCC)	 AG	5248-5417		TG
-recovered pasa_asmbl_49464.p1, internal, 4553, 4703
Couldn't classify 632, 747
Couldn't classify 5248, 5387
Sorry, prediction snap_scaffold_612-snap.1-T1 fails validation.
(CTG)	 AG	632-747	GT	CGG
(GGA)	 AG	1159-1286	GT	AGG
(CTC)	 AG	2250-2322	GT	GGG
(CCC)	 AG	2578-2705	GT	AGG
(ATC)	 AG	4553-4703	GT	CGG
(GCC)	 AG	5248-5387	GT	CAG
-recovered snap_scaffold_612-snap.1-T1, internal, 632, 747
-recovered snap_scaffold_612-snap.1-T1, internal, 1159, 1286
-recovered snap_scaffold_612-snap.1-T1, internal, 2250, 2322
-recovered snap_scaffold_612-snap.1-T1, internal, 2578, 2705
-recovered snap_scaffold_612-snap.1-T1, internal, 4553, 4703
-recovered snap_scaffold_612-snap.1-T1, internal, 5248, 5387
Couldn't classify 632, 747
Couldn't classify 5248, 5417
Sorry, prediction Augustus_model.g40079.t1 fails validation.
(CTG)	 AG	632-747	GT	CGG
(GGA)	 AG	1159-1286	GT	AGG
(CTC)	 AG	2250-2322	GT	GGG
(CCC)	 AG	2578-2705	GT	AGG
(ATC)	 AG	4553-4703	GT	CGG
(GCC)	 AG	5248-5417		TG
-recovered Augustus_model.g40079.t1, internal, 632, 747
-recovered Augustus_model.g40079.t1, internal, 1159, 1286
-recovered Augustus_model.g40079.t1, internal, 2250, 2322
-recovered Augustus_model.g40079.t1, internal, 2578, 2705
-recovered Augustus_model.g40079.t1, internal, 4553, 4703
Couldn't classify 630, 747
Couldn't classify 2607, 2705
Sorry, prediction pasa_asmbl_49463.p2 fails validation.
(AGC)	 CC	630-747	GT	CGG
(GGA)	 AG	1159-1286	GT	AGG
(GAT)	 AG	2607-2705	GT	AGG
-recovered pasa_asmbl_49463.p2, internal, 1159, 1286
-recovered pasa_asmbl_49463.p2, internal, 2607, 2705
Couldn't classify 632, 747
Sorry, prediction GlimmerHMM_glimmerT_60545-T1 fails validation.
(CTG)	 AG	632-747	GT	CGG
(GGA)	 AG	1159-1286	GT	AGG
(GAT)	 AG	2607-2732	CA	AAC
-recovered GlimmerHMM_glimmerT_60545-T1, terminal, 2607, 2732
-recovered GlimmerHMM_glimmerT_60545-T1, internal, 632, 747
-recovered GlimmerHMM_glimmerT_60545-T1, internal, 1159, 1286

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4786, rend_intergenic: 605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5417
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4786, rend_intergenic: 605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support