-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_610

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 325, 452
Sorry, prediction GlimmerHMM_glimmerT_60542-T1 fails validation.
(GCA)	 AG	325-452	GT	AGG
(GGC)	 AG	750-859	GT	AGG
(GCT)	 AG	912-1063	GT	ATG
(CAG)	 AG	4253-4604	AG	AGA
-recovered GlimmerHMM_glimmerT_60542-T1, terminal, 4253, 4604
-recovered GlimmerHMM_glimmerT_60542-T1, internal, 325, 452
-recovered GlimmerHMM_glimmerT_60542-T1, internal, 750, 859
-recovered GlimmerHMM_glimmerT_60542-T1, internal, 912, 1063
Couldn't classify 325, 452
Sorry, prediction snap_scaffold_610-snap.1-T1 fails validation.
(GCA)	 AG	325-452	GT	AGG
(GTA)	 AG	720-859	GT	AGG
(GTC)	 AG	4194-4604	AG	AGA
-recovered snap_scaffold_610-snap.1-T1, terminal, 4194, 4604
-recovered snap_scaffold_610-snap.1-T1, internal, 325, 452
-recovered snap_scaffold_610-snap.1-T1, internal, 720, 859
Couldn't classify 325, 452
Sorry, prediction Augustus_model.g40078.t1 fails validation.
(GCA)	 AG	325-452	GT	AGG
(GTA)	 AG	720-859	GT	AGG
(GTC)	 AG	4194-4410	GT	TGG
(GAC)	 AG	5090-5103	TG	GAT
-recovered Augustus_model.g40078.t1, terminal, 5090, 5103
-recovered Augustus_model.g40078.t1, internal, 325, 452
-recovered Augustus_model.g40078.t1, internal, 720, 859
-recovered Augustus_model.g40078.t1, internal, 4194, 4410

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5420
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support