-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_61

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_61-snap.6-T1
Valid prediction for GlimmerHMM_glimmerT_59634-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_61-snap.4-T1
Couldn't classify 318, 422
Sorry, prediction Augustus_model.g39515.t1 fails validation.
(ATC)	 AG	318-422	GT	CTG
(TTC)	 AG	1000-1101	GT	TGG
(GTC)	 AG	1297-1470	GT	TGG
(AAA)	 AG	1767-1946	CC	GAC
-recovered Augustus_model.g39515.t1, terminal, 1767, 1946
-recovered Augustus_model.g39515.t1, internal, 318, 422
-recovered Augustus_model.g39515.t1, internal, 1000, 1101
-recovered Augustus_model.g39515.t1, internal, 1297, 1470
Valid prediction for GlimmerHMM_glimmerT_59635-T1
Valid prediction for Augustus_model.g39514.t1
Valid prediction for snap_scaffold_61-snap.1-T1
Valid prediction for snap_scaffold_61-snap.2-T1
Valid prediction for snap_scaffold_61-snap.3-T1
Couldn't classify 24149, 24250
Sorry, prediction Augustus_model.g39513.t1 fails validation.
(ATG)	 AC	20002-20047	GT	CGG
(GTT)	 AG	20181-20369	GT	AGG
(GAA)	 AG	20661-20762	GT	AGG
(GAG)	 AG	20904-21060	GT	GGG
(AGC)	 AG	21422-21516	GT	CGG
(GTT)	 AG	21650-21880	GT	TGG
(GAA)	 AG	22132-22233	GT	AGG
(GAG)	 AG	22376-22600	GT	TGG
(GTT)	 AG	23665-23883	GT	AGG
(GAA)	 AG	24149-24250	GT	AGG
-recovered Augustus_model.g39513.t1, initial, 20002, 20047
-recovered Augustus_model.g39513.t1, internal, 20181, 20369
-recovered Augustus_model.g39513.t1, internal, 20661, 20762
-recovered Augustus_model.g39513.t1, internal, 20904, 21060
-recovered Augustus_model.g39513.t1, internal, 21422, 21516
-recovered Augustus_model.g39513.t1, internal, 21650, 21880
-recovered Augustus_model.g39513.t1, internal, 22132, 22233
-recovered Augustus_model.g39513.t1, internal, 22376, 22600
-recovered Augustus_model.g39513.t1, internal, 23665, 23883
-recovered Augustus_model.g39513.t1, internal, 24149, 24250
Valid prediction for snap_scaffold_61-snap.5-T1
Sorry, intron length (5) is less than minimum required (10)
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_59633-T1
Couldn't classify 318, 422
Sorry, prediction GlimmerHMM_glimmerT_59636-T1 fails validation.
(ATC)	 AG	318-422	GT	CTG
(TTC)	 AG	1000-1101	GT	TGG
(TTT)	 AG	1267-1470	GT	TGG
(AAA)	 AG	1767-1946	CC	GAC
-recovered GlimmerHMM_glimmerT_59636-T1, terminal, 1767, 1946
-recovered GlimmerHMM_glimmerT_59636-T1, internal, 318, 422
-recovered GlimmerHMM_glimmerT_59636-T1, internal, 1000, 1101
-recovered GlimmerHMM_glimmerT_59636-T1, internal, 1267, 1470

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18949, rend_intergenic: 14964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 77


building trellis

1.3    
2.5    
3.8    
5.1    
6.3    
7.6    
8.9    
10.1    
11.4    
12.7    
13.9    
15.2    
16.5    
17.7    
19.0    
20.3    
21.5    
22.8    
24.1    
25.3    
26.6    
27.8    
29.1    
30.4    
31.6    
32.9    
34.2    
35.4    
36.7    
38.0    
39.2    
40.5    
41.8    
43.0    
44.3    
45.6    
46.8    
48.1    
49.4    
50.6    
51.9    
53.2    
54.4    
55.7    
57.0    
58.2    
59.5    
60.8    
62.0    
63.3    
64.6    
65.8    
67.1    
68.4    
69.6    
70.9    
72.2    
73.4    
74.7    
75.9    
77.2    
78.5    
79.7    
81.0    
82.3    
83.5    
84.8    
86.1    
87.3    
88.6    
89.9    
91.1    
92.4    
93.7    
94.9    
96.2    
97.5    
98.7    
-found 5 predictions from path traversal
Error with prediction: snap lend_intergenic: 18949, rend_intergenic: 14964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support