-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_608

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4843, 4929
Sorry, prediction GlimmerHMM_glimmerT_60541-T1 fails validation.
(ATG)	 TT	3691-3822	GT	AGG
(AAA)	 AG	4843-4929	GT	CAG
-recovered GlimmerHMM_glimmerT_60541-T1, initial, 3691, 3822
-recovered GlimmerHMM_glimmerT_60541-T1, internal, 4843, 4929
Couldn't classify 1208, 1260
Couldn't classify 4831, 4929
Sorry, prediction snap_scaffold_608-snap.3-T1 fails validation.
(GCT)	 AG	1208-1260	GT	CTG
(GTG)	 AG	1710-1874	GT	AGG
(GTG)	 AG	3682-3822	GT	AGG
(ATA)	 AG	4831-4929	GT	CAG
-recovered snap_scaffold_608-snap.3-T1, internal, 1208, 1260
-recovered snap_scaffold_608-snap.3-T1, internal, 1710, 1874
-recovered snap_scaffold_608-snap.3-T1, internal, 3682, 3822
-recovered snap_scaffold_608-snap.3-T1, internal, 4831, 4929

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60540-T1
Couldn't classify 5113, 5156
Sorry, prediction snap_scaffold_608-snap.1-T1 fails validation.
(ATG)	 AG	4294-4471	GT	AGG
(CTG)	 AG	5113-5156	GT	TGG
-recovered snap_scaffold_608-snap.1-T1, initial, 4294, 4471
-recovered snap_scaffold_608-snap.1-T1, internal, 4294, 4471
-recovered snap_scaffold_608-snap.1-T1, internal, 5113, 5156
Valid prediction for snap_scaffold_608-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3818, rend_intergenic: 1208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5429
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3818, rend_intergenic: 1208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support