-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_603

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4570, 5055
Sorry, prediction Augustus_model.g40076.t1 fails validation.
(ATG)	 TC	2760-2802	GT	GGG
(ATC)	 AG	2950-2976	GT	AGG
(ATT)	 AG	3134-3160	GT	AGG
(TTG)	 AG	4570-5055	GT	AGG
-recovered Augustus_model.g40076.t1, initial, 2760, 2802
-recovered Augustus_model.g40076.t1, internal, 2950, 2976
-recovered Augustus_model.g40076.t1, internal, 3134, 3160
-recovered Augustus_model.g40076.t1, internal, 4570, 5055
Couldn't classify 5101, 5145
Sorry, prediction snap_scaffold_603-snap.1-T1 fails validation.
(ATG)	 AA	3933-3945	GT	TAG
(TTG)	 AG	4570-5055	GT	AGG
(ACA)	 AG	5101-5145	GT	AGG
-recovered snap_scaffold_603-snap.1-T1, initial, 3933, 3945
-recovered snap_scaffold_603-snap.1-T1, internal, 4570, 5055
-recovered snap_scaffold_603-snap.1-T1, internal, 5101, 5145
Valid prediction for GlimmerHMM_glimmerT_60537-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60537-T1 4570-5402-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5454
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support