-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_601

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 32, 221
Sorry, prediction snap_scaffold_601-snap.1-T1 fails validation.
(AGG)	 AG	32-221	GT	ATG
(CTG)	 AG	1182-1187	CG	AGC
-recovered snap_scaffold_601-snap.1-T1, terminal, 1182, 1187
-recovered snap_scaffold_601-snap.1-T1, internal, 32, 221

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_601-snap.3-T1
Couldn't classify 4425, 4936
Sorry, prediction snap_scaffold_601-snap.2-T1 fails validation.
(ATG)	 AG	4366-4407	GT	CGG
(GTG)	 AG	4425-4936	GT	CGG
-recovered snap_scaffold_601-snap.2-T1, initial, 4366, 4407
-recovered snap_scaffold_601-snap.2-T1, internal, 4366, 4407
-recovered snap_scaffold_601-snap.2-T1, internal, 4425, 4936
Valid prediction for GlimmerHMM_glimmerT_60536-T1
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1187, rend_intergenic: 551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5486
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1187, rend_intergenic: 551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support