-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_6/scaffold_6_6277370-6386039

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g9795.t1
Valid prediction for GlimmerHMM_glimmerT_14771-T1
Valid prediction for snap_scaffold_6-snap.1430-T1
Valid prediction for GlimmerHMM_glimmerT_14781-T1
Valid prediction for snap_scaffold_6-snap.1417-T1
Valid prediction for Augustus_model.g9781.t1
Valid prediction for snap_scaffold_6-snap.1440-T1
Valid prediction for GlimmerHMM_glimmerT_14800-T1
Valid prediction for Augustus_model.g9785.t1
Valid prediction for snap_scaffold_6-snap.1426-T1
Valid prediction for snap_scaffold_6-snap.1428-T1
Valid prediction for GlimmerHMM_glimmerT_14797-T1
Valid prediction for snap_scaffold_6-snap.1442-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_6-snap.1415-T1
Valid prediction for GlimmerHMM_glimmerT_14776-T1
Valid prediction for snap_scaffold_6-snap.1441-T1
Valid prediction for snap_scaffold_6-snap.1444-T1
Valid prediction for snap_scaffold_6-snap.1438-T1
Valid prediction for Augustus_model.g9794.t1
Valid prediction for snap_scaffold_6-snap.1433-T1
Valid prediction for GlimmerHMM_glimmerT_14775-T1
Valid prediction for GlimmerHMM_glimmerT_14782-T1
Valid prediction for Augustus_model.g9792.t1
Valid prediction for GlimmerHMM_glimmerT_14783-T1
Valid prediction for Augustus_model.g9788.t1
Valid prediction for GlimmerHMM_glimmerT_14774-T1
Valid prediction for Augustus_model.g9784.t1
Valid prediction for GlimmerHMM_glimmerT_14792-T1
Valid prediction for Augustus_model.g9783.t1
Valid prediction for snap_scaffold_6-snap.1445-T1
Valid prediction for GlimmerHMM_glimmerT_14796-T1
Valid prediction for snap_scaffold_6-snap.1413-T1
Valid prediction for snap_scaffold_6-snap.1423-T1
Valid prediction for GlimmerHMM_glimmerT_14794-T1
Valid prediction for snap_scaffold_6-snap.1421-T1
Valid prediction for snap_scaffold_6-snap.1446-T1
Valid prediction for GlimmerHMM_glimmerT_14795-T1
Valid prediction for GlimmerHMM_glimmerT_14787-T1
Valid prediction for snap_scaffold_6-snap.1436-T1
Valid prediction for snap_scaffold_6-snap.1420-T1
Valid prediction for snap_scaffold_6-snap.1424-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_14780-T1
Valid prediction for GlimmerHMM_glimmerT_14801-T1
Valid prediction for GlimmerHMM_glimmerT_14773-T1
Valid prediction for snap_scaffold_6-snap.1439-T1
Valid prediction for snap_scaffold_6-snap.1414-T1
Valid prediction for snap_scaffold_6-snap.1443-T1
Valid prediction for Augustus_model.g9782.t1
Valid prediction for snap_scaffold_6-snap.1432-T1
Valid prediction for GlimmerHMM_glimmerT_14784-T1
Valid prediction for Augustus_model.g9786.t1
Valid prediction for Augustus_model.g9789.t1
Valid prediction for GlimmerHMM_glimmerT_14785-T1
Valid prediction for GlimmerHMM_glimmerT_14789-T1
Valid prediction for Augustus_model.g9790.t1
Valid prediction for GlimmerHMM_glimmerT_14777-T1
Valid prediction for snap_scaffold_6-snap.1418-T1
Valid prediction for snap_scaffold_6-snap.1419-T1
Valid prediction for GlimmerHMM_glimmerT_14778-T1
Valid prediction for GlimmerHMM_glimmerT_14779-T1
Valid prediction for snap_scaffold_6-snap.1434-T1
Valid prediction for Augustus_model.g9791.t1
Valid prediction for GlimmerHMM_glimmerT_14788-T1
Valid prediction for snap_scaffold_6-snap.1425-T1
Valid prediction for snap_scaffold_6-snap.1435-T1
Valid prediction for GlimmerHMM_glimmerT_14786-T1
Valid prediction for GlimmerHMM_glimmerT_14799-T1
Valid prediction for Augustus_model.g9793.t1
Valid prediction for snap_scaffold_6-snap.1427-T1
Valid prediction for GlimmerHMM_glimmerT_14790-T1
Valid prediction for GlimmerHMM_glimmerT_14798-T1
Valid prediction for snap_scaffold_6-snap.1412-T1
Valid prediction for snap_scaffold_6-snap.1422-T1
Valid prediction for GlimmerHMM_glimmerT_14793-T1
Valid prediction for Augustus_model.g9787.t1
Valid prediction for snap_scaffold_6-snap.1437-T1
Valid prediction for GlimmerHMM_glimmerT_14791-T1
Valid prediction for snap_scaffold_6-snap.1429-T1
Valid prediction for GlimmerHMM_glimmerT_14772-T1
Valid prediction for snap_scaffold_6-snap.1416-T1
Valid prediction for snap_scaffold_6-snap.1431-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5493, rend_intergenic: 4189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6004, rend_intergenic: 5626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8050, rend_intergenic: 7884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9721, rend_intergenic: 8805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14529, rend_intergenic: 14212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16513, rend_intergenic: 16222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25926, rend_intergenic: 24186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36227, rend_intergenic: 33285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39016, rend_intergenic: 37765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41247, rend_intergenic: 39833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48242, rend_intergenic: 46581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64653, rend_intergenic: 53502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65166, rend_intergenic: 64877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67025, rend_intergenic: 65182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71569, rend_intergenic: 69970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79585, rend_intergenic: 78468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91688, rend_intergenic: 80033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93337, rend_intergenic: 92594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106000, rend_intergenic: 94864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 108670
-exon list size: 273


building trellis

0.4    
0.7    
1.1    
1.5    
1.8    
2.2    
2.5    
2.9    
3.3    
3.6    
4.0    
4.4    
4.7    
5.1    
5.5    
5.8    
6.2    
6.5    
6.9    
7.3    
7.6    
8.0    
8.4    
8.7    
9.1    
9.5    
9.8    
10.2    
10.5    
10.9    
11.3    
11.6    
12.0    
12.4    
12.7    
13.1    
13.5    
13.8    
14.2    
14.5    
14.9    
15.3    
15.6    
16.0    
16.4    
16.7    
17.1    
17.5    
17.8    
18.2    
18.5    
18.9    
19.3    
19.6    
20.0    
20.4    
20.7    
21.1    
21.5    
21.8    
22.2    
22.5    
22.9    
23.3    
23.6    
24.0    
24.4    
24.7    
25.1    
25.5    
25.8    
26.2    
26.5    
26.9    
27.3    
27.6    
28.0    
28.4    
28.7    
29.1    
29.5    
29.8    
30.2    
30.5    
30.9    
31.3    
31.6    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.3    
35.6    
36.0    
36.4    
36.7    
37.1    
37.5    
37.8    
38.2    
38.5    
38.9    
39.3    
39.6    
40.0    
40.4    
40.7    
41.1    
41.5    
41.8    
42.2    
42.5    
42.9    
43.3    
43.6    
44.0    
44.4    
44.7    
45.1    
45.5    
45.8    
46.2    
46.5    
46.9    
47.3    
47.6    
48.0    
48.4    
48.7    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.3    
51.6    
52.0    
52.4    
52.7    
53.1    
53.5    
53.8    
54.2    
54.5    
54.9    
55.3    
55.6    
56.0    
56.4    
56.7    
57.1    
57.5    
57.8    
58.2    
58.5    
58.9    
59.3    
59.6    
60.0    
60.4    
60.7    
61.1    
61.5    
61.8    
62.2    
62.5    
62.9    
63.3    
63.6    
64.0    
64.4    
64.7    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.4    
68.7    
69.1    
69.5    
69.8    
70.2    
70.5    
70.9    
71.3    
71.6    
72.0    
72.4    
72.7    
73.1    
73.5    
73.8    
74.2    
74.5    
74.9    
75.3    
75.6    
76.0    
76.4    
76.7    
77.1    
77.5    
77.8    
78.2    
78.5    
78.9    
79.3    
79.6    
80.0    
80.4    
80.7    
81.1    
81.5    
81.8    
82.2    
82.5    
82.9    
83.3    
83.6    
84.0    
84.4    
84.7    
85.1    
85.5    
85.8    
86.2    
86.5    
86.9    
87.3    
87.6    
88.0    
88.4    
88.7    
89.1    
89.5    
89.8    
90.2    
90.5    
90.9    
91.3    
91.6    
92.0    
92.4    
92.7    
93.1    
93.5    
93.8    
94.2    
94.5    
94.9    
95.3    
95.6    
96.0    
96.4    
96.7    
97.1    
97.5    
97.8    
98.2    
98.5    
98.9    
99.3    
99.6    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 5493, rend_intergenic: 4189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6004, rend_intergenic: 5626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8050, rend_intergenic: 7884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9721, rend_intergenic: 8805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14529, rend_intergenic: 14212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16513, rend_intergenic: 16222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25926, rend_intergenic: 24186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36227, rend_intergenic: 33285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39016, rend_intergenic: 37765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41247, rend_intergenic: 39833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48242, rend_intergenic: 46581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64653, rend_intergenic: 53502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65166, rend_intergenic: 64877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67025, rend_intergenic: 65182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71569, rend_intergenic: 69970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79585, rend_intergenic: 78468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91688, rend_intergenic: 80033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93337, rend_intergenic: 92594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106000, rend_intergenic: 94864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support