-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_6/scaffold_6_3950540-4143323

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.956-T1
Valid prediction for snap_scaffold_6-snap.950-T1
Valid prediction for snap_scaffold_6-snap.938-T1
Valid prediction for Augustus_model.g9551.t1
Valid prediction for snap_scaffold_6-snap.962-T1
Valid prediction for snap_scaffold_6-snap.965-T1
Valid prediction for Augustus_model.g9552.t1
Valid prediction for GlimmerHMM_glimmerT_14424-T1
Valid prediction for snap_scaffold_6-snap.945-T1
Valid prediction for snap_scaffold_6-snap.955-T1
Valid prediction for GlimmerHMM_glimmerT_14426-T1
Valid prediction for snap_scaffold_6-snap.969-T1
Valid prediction for Augustus_model.g9558.t1
Valid prediction for GlimmerHMM_glimmerT_14428-T1
Valid prediction for snap_scaffold_6-snap.946-T1
Valid prediction for Augustus_model.g9563.t1
Valid prediction for snap_scaffold_6-snap.948-T1
Valid prediction for snap_scaffold_6-snap.959-T1
Valid prediction for snap_scaffold_6-snap.953-T1
Valid prediction for GlimmerHMM_glimmerT_14441-T1
Valid prediction for GlimmerHMM_glimmerT_14430-T1
Valid prediction for GlimmerHMM_glimmerT_14440-T1
Valid prediction for snap_scaffold_6-snap.941-T1
Valid prediction for snap_scaffold_6-snap.935-T1
Valid prediction for GlimmerHMM_glimmerT_14433-T1
Valid prediction for Augustus_model.g9555.t1
Valid prediction for GlimmerHMM_glimmerT_14427-T1
Valid prediction for snap_scaffold_6-snap.936-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g9561.t1
Valid prediction for snap_scaffold_6-snap.973-T1
Valid prediction for snap_scaffold_6-snap.944-T1
Valid prediction for GlimmerHMM_glimmerT_14422-T1
Valid prediction for snap_scaffold_6-snap.963-T1
Valid prediction for snap_scaffold_6-snap.933-T1
Valid prediction for GlimmerHMM_glimmerT_14432-T1
Valid prediction for GlimmerHMM_glimmerT_14438-T1
Valid prediction for snap_scaffold_6-snap.931-T1
Valid prediction for snap_scaffold_6-snap.968-T1
Valid prediction for snap_scaffold_6-snap.943-T1
Valid prediction for Augustus_model.g9557.t1
Valid prediction for snap_scaffold_6-snap.940-T1
Valid prediction for snap_scaffold_6-snap.971-T1
Valid prediction for GlimmerHMM_glimmerT_14439-T1
Valid prediction for snap_scaffold_6-snap.960-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_6-snap.967-T1
Valid prediction for GlimmerHMM_glimmerT_14446-T1
Valid prediction for CodingQuarry_transcript_55002-T1
Valid prediction for snap_scaffold_6-snap.934-T1
Valid prediction for GlimmerHMM_glimmerT_14431-T1
Couldn't classify 95126, 95182
Couldn't classify 95381, 95635
Sorry, prediction pasa_asmbl_49330.p1 fails validation.
(AGA)	 AA	95126-95182	GT	AGG
(CAT)	 AG	95381-95635	CT	GGC
Valid prediction for GlimmerHMM_glimmerT_14425-T1
Valid prediction for GlimmerHMM_glimmerT_14442-T1
Valid prediction for snap_scaffold_6-snap.974-T1
Valid prediction for snap_scaffold_6-snap.947-T1
Valid prediction for GlimmerHMM_glimmerT_14435-T1
Valid prediction for GlimmerHMM_glimmerT_14447-T1
Valid prediction for snap_scaffold_6-snap.939-T1
Valid prediction for CodingQuarry_transcript_55003-T1
Valid prediction for snap_scaffold_6-snap.961-T1
Valid prediction for snap_scaffold_6-snap.929-T1
Valid prediction for snap_scaffold_6-snap.957-T1
Valid prediction for snap_scaffold_6-snap.966-T1
Valid prediction for snap_scaffold_6-snap.952-T1
Valid prediction for snap_scaffold_6-snap.975-T1
Valid prediction for GlimmerHMM_glimmerT_14443-T1
Valid prediction for Augustus_model.g9560.t1
Valid prediction for snap_scaffold_6-snap.972-T1
Valid prediction for snap_scaffold_6-snap.958-T1
Valid prediction for GlimmerHMM_glimmerT_14423-T1
Valid prediction for Augustus_model.g9556.t1
Valid prediction for snap_scaffold_6-snap.951-T1
Valid prediction for snap_scaffold_6-snap.930-T1
Valid prediction for snap_scaffold_6-snap.954-T1
Valid prediction for snap_scaffold_6-snap.942-T1
Valid prediction for Augustus_model.g9554.t1
Valid prediction for GlimmerHMM_glimmerT_14437-T1
Valid prediction for Augustus_model.g9550.t1
Valid prediction for GlimmerHMM_glimmerT_14444-T1
Valid prediction for snap_scaffold_6-snap.932-T1
Valid prediction for GlimmerHMM_glimmerT_14445-T1
Valid prediction for pasa_asmbl_48286.p1
Valid prediction for CodingQuarry_transcript_55001-T1
Valid prediction for snap_scaffold_6-snap.937-T1
Valid prediction for Augustus_model.g9562.t1
Valid prediction for Augustus_model.g9564.t1
Valid prediction for snap_scaffold_6-snap.970-T1
Valid prediction for GlimmerHMM_glimmerT_14434-T1
Valid prediction for snap_scaffold_6-snap.964-T1
Valid prediction for Augustus_model.g9559.t1
Valid prediction for GlimmerHMM_glimmerT_14436-T1
Valid prediction for Augustus_model.g9553.t1
Valid prediction for GlimmerHMM_glimmerT_14429-T1
Valid prediction for snap_scaffold_6-snap.949-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13297, rend_intergenic: 10511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44608, rend_intergenic: 40387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64547, rend_intergenic: 54117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67075, rend_intergenic: 64778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89545, rend_intergenic: 85661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101456, rend_intergenic: 97160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111345, rend_intergenic: 109774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115682, rend_intergenic: 114301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119424, rend_intergenic: 118854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146912, rend_intergenic: 139838  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156150, rend_intergenic: 149214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159534, rend_intergenic: 157729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181780, rend_intergenic: 179228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 192784
-exon list size: 371


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.1    
2.4    
2.7    
2.9    
3.2    
3.5    
3.8    
4.0    
4.3    
4.6    
4.8    
5.1    
5.4    
5.6    
5.9    
6.2    
6.4    
6.7    
7.0    
7.2    
7.5    
7.8    
8.0    
8.3    
8.6    
8.8    
9.1    
9.4    
9.7    
9.9    
10.2    
10.5    
10.7    
11.0    
11.3    
11.5    
11.8    
12.1    
12.3    
12.6    
12.9    
13.1    
13.4    
13.7    
13.9    
14.2    
14.5    
14.7    
15.0    
15.3    
15.5    
15.8    
16.1    
16.4    
16.6    
16.9    
17.2    
17.4    
17.7    
18.0    
18.2    
18.5    
18.8    
19.0    
19.3    
19.6    
19.8    
20.1    
20.4    
20.6    
20.9    
21.2    
21.4    
21.7    
22.0    
22.3    
22.5    
22.8    
23.1    
23.3    
23.6    
23.9    
24.1    
24.4    
24.7    
24.9    
25.2    
25.5    
25.7    
26.0    
26.3    
26.5    
26.8    
27.1    
27.3    
27.6    
27.9    
28.2    
28.4    
28.7    
29.0    
29.2    
29.5    
29.8    
30.0    
30.3    
30.6    
30.8    
31.1    
31.4    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.0    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
35.9    
36.2    
36.5    
36.7    
37.0    
37.3    
37.5    
37.8    
38.1    
38.3    
38.6    
38.9    
39.1    
39.4    
39.7    
39.9    
40.2    
40.5    
40.8    
41.0    
41.3    
41.6    
41.8    
42.1    
42.4    
42.6    
42.9    
43.2    
43.4    
43.7    
44.0    
44.2    
44.5    
44.8    
45.0    
45.3    
45.6    
45.8    
46.1    
46.4    
46.6    
46.9    
47.2    
47.5    
47.7    
48.0    
48.3    
48.5    
48.8    
49.1    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
50.9    
51.2    
51.5    
51.7    
52.0    
52.3    
52.5    
52.8    
53.1    
53.4    
53.6    
53.9    
54.2    
54.4    
54.7    
55.0    
55.2    
55.5    
55.8    
56.0    
56.3    
56.6    
56.8    
57.1    
57.4    
57.6    
57.9    
58.2    
58.4    
58.7    
59.0    
59.2    
59.5    
59.8    
60.1    
60.3    
60.6    
60.9    
61.1    
61.4    
61.7    
61.9    
62.2    
62.5    
62.7    
63.0    
63.3    
63.5    
63.8    
64.1    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
66.0    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.8    
68.1    
68.4    
68.6    
68.9    
69.2    
69.4    
69.7    
70.0    
70.2    
70.5    
70.8    
71.0    
71.3    
71.6    
71.8    
72.1    
72.4    
72.7    
72.9    
73.2    
73.5    
73.7    
74.0    
74.3    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.1    
76.4    
76.7    
76.9    
77.2    
77.5    
77.7    
78.0    
78.3    
78.6    
78.8    
79.1    
79.4    
79.6    
79.9    
80.2    
80.4    
80.7    
81.0    
81.2    
81.5    
81.8    
82.0    
82.3    
82.6    
82.8    
83.1    
83.4    
83.6    
83.9    
84.2    
84.5    
84.7    
85.0    
85.3    
85.5    
85.8    
86.1    
86.3    
86.6    
86.9    
87.1    
87.4    
87.7    
87.9    
88.2    
88.5    
88.7    
89.0    
89.3    
89.5    
89.8    
90.1    
90.3    
90.6    
90.9    
91.2    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.0    
93.3    
93.6    
93.8    
94.1    
94.4    
94.6    
94.9    
95.2    
95.4    
95.7    
96.0    
96.2    
96.5    
96.8    
97.1    
97.3    
97.6    
97.9    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 13297, rend_intergenic: 10511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44608, rend_intergenic: 40387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64547, rend_intergenic: 54117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67075, rend_intergenic: 64778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89545, rend_intergenic: 85661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101456, rend_intergenic: 97160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111345, rend_intergenic: 109774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115682, rend_intergenic: 114301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119424, rend_intergenic: 118854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146912, rend_intergenic: 139838  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156150, rend_intergenic: 149214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159534, rend_intergenic: 157729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181780, rend_intergenic: 179228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support