-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_6/scaffold_6_3658676-3793259

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.887-T1
Valid prediction for snap_scaffold_6-snap.888-T1
Valid prediction for snap_scaffold_6-snap.891-T1
Valid prediction for GlimmerHMM_glimmerT_14369-T1
Valid prediction for snap_scaffold_6-snap.892-T1
Valid prediction for GlimmerHMM_glimmerT_14365-T1
Valid prediction for snap_scaffold_6-snap.872-T1
Valid prediction for HiQ_model.g9534.t1
Valid prediction for Augustus_model.g9528.t1
Valid prediction for GlimmerHMM_glimmerT_14390-T1
Valid prediction for GlimmerHMM_glimmerT_14366-T1
Couldn't classify 128379, 128451
Sorry, prediction pasa_asmbl_46856.p1 fails validation.
(ATG)	 CA	125901-125927	GT	AGG
(GAC)	 AG	126092-126147	GT	TTG
(GAC)	 AG	126830-126930	GT	CGG
(CTT)	 AG	127073-127119	GT	AGG
(GCA)	 AG	127469-127634	GT	AGG
(GGG)	 AG	127808-127943	GT	AGG
(TCA)	 AG	128379-128451	GT	AGG
-recovered pasa_asmbl_46856.p1, initial, 125901, 125927
-recovered pasa_asmbl_46856.p1, internal, 126092, 126147
-recovered pasa_asmbl_46856.p1, internal, 126830, 126930
-recovered pasa_asmbl_46856.p1, internal, 127073, 127119
-recovered pasa_asmbl_46856.p1, internal, 127469, 127634
-recovered pasa_asmbl_46856.p1, internal, 127808, 127943
-recovered pasa_asmbl_46856.p1, internal, 128379, 128451
Valid prediction for GlimmerHMM_glimmerT_14361-T1
Valid prediction for Augustus_model.g9524.t1
Valid prediction for GlimmerHMM_glimmerT_14372-T1
Valid prediction for snap_scaffold_6-snap.877-T1
Valid prediction for snap_scaffold_6-snap.882-T1
Valid prediction for snap_scaffold_6-snap.873-T1
Valid prediction for snap_scaffold_6-snap.857-T1
Valid prediction for snap_scaffold_6-snap.884-T1
Valid prediction for Augustus_model.g9530.t1
Valid prediction for GlimmerHMM_glimmerT_14386-T1
Valid prediction for GlimmerHMM_glimmerT_14385-T1
Valid prediction for snap_scaffold_6-snap.875-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g9523.t1
Valid prediction for snap_scaffold_6-snap.880-T1
Valid prediction for GlimmerHMM_glimmerT_14377-T1
Valid prediction for GlimmerHMM_glimmerT_14381-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_6-snap.885-T1
Valid prediction for Augustus_model.g9532.t1
Valid prediction for GlimmerHMM_glimmerT_14374-T1
Valid prediction for GlimmerHMM_glimmerT_14389-T1
Valid prediction for GlimmerHMM_glimmerT_14383-T1
Couldn't classify 128562, 128586
Sorry, prediction pasa_asmbl_46857.p1 fails validation.
(GTT)	 AT	128562-128586	GT	AGG
(GAG)	 AG	128686-128870	GT	GGG
(GTG)	 AG	129088-129295	GT	AGG
(ACC)	 AG	129755-129955	GT	GGG
(CTG)	 AG	130084-130232	GT	TGG
(TTC)	 AG	130474-130668	GT	GGG
(ATC)	 AG	130845-131090	GT	CGG
(ATT)	 AG	131293-131382	GT	AGG
(AAA)	 AG	131559-131725	GT	ACG
(ACT)	 AG	131855-132096	GT	TGG
(GTG)	 AG	132203-132372	GT	GGG
(GTG)	 AG	132638-132811	GT	GTG
(CTG)	 AG	133072-133149	AT	AGA
-recovered pasa_asmbl_46857.p1, terminal, 133072, 133149
-recovered pasa_asmbl_46857.p1, internal, 128686, 128870
-recovered pasa_asmbl_46857.p1, internal, 129088, 129295
-recovered pasa_asmbl_46857.p1, internal, 129755, 129955
-recovered pasa_asmbl_46857.p1, internal, 130084, 130232
-recovered pasa_asmbl_46857.p1, internal, 130474, 130668
-recovered pasa_asmbl_46857.p1, internal, 130845, 131090
-recovered pasa_asmbl_46857.p1, internal, 131293, 131382
-recovered pasa_asmbl_46857.p1, internal, 131559, 131725
-recovered pasa_asmbl_46857.p1, internal, 131855, 132096
-recovered pasa_asmbl_46857.p1, internal, 132203, 132372
-recovered pasa_asmbl_46857.p1, internal, 132638, 132811
Valid prediction for snap_scaffold_6-snap.862-T1
Valid prediction for snap_scaffold_6-snap.878-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_6-snap.858-T1
Valid prediction for snap_scaffold_6-snap.871-T1
Valid prediction for snap_scaffold_6-snap.869-T1
Valid prediction for GlimmerHMM_glimmerT_14363-T1
Valid prediction for Augustus_model.g9525.t1
Valid prediction for Augustus_model.g9533.t1
Valid prediction for snap_scaffold_6-snap.893-T1
Valid prediction for GlimmerHMM_glimmerT_14371-T1
Valid prediction for snap_scaffold_6-snap.868-T1
Valid prediction for GlimmerHMM_glimmerT_14373-T1
Valid prediction for GlimmerHMM_glimmerT_14382-T1
Valid prediction for snap_scaffold_6-snap.890-T1
Valid prediction for GlimmerHMM_glimmerT_14368-T1
Valid prediction for Augustus_model.g9529.t1
Valid prediction for snap_scaffold_6-snap.879-T1
Valid prediction for snap_scaffold_6-snap.867-T1
Valid prediction for snap_scaffold_6-snap.859-T1
Valid prediction for snap_scaffold_6-snap.863-T1
Valid prediction for Augustus_model.g9521.t1
Valid prediction for snap_scaffold_6-snap.866-T1
Valid prediction for snap_scaffold_6-snap.874-T1
Valid prediction for snap_scaffold_6-snap.876-T1
Valid prediction for Augustus_model.g9526.t1
Valid prediction for GlimmerHMM_glimmerT_14387-T1
Valid prediction for GlimmerHMM_glimmerT_14384-T1
Valid prediction for snap_scaffold_6-snap.861-T1
Valid prediction for snap_scaffold_6-snap.856-T1
Valid prediction for GlimmerHMM_glimmerT_14364-T1
Valid prediction for GlimmerHMM_glimmerT_14370-T1
Valid prediction for GlimmerHMM_glimmerT_14388-T1
Valid prediction for snap_scaffold_6-snap.860-T1
Valid prediction for snap_scaffold_6-snap.886-T1
Valid prediction for snap_scaffold_6-snap.881-T1
Valid prediction for GlimmerHMM_glimmerT_14367-T1
Valid prediction for Augustus_model.g9527.t1
Valid prediction for GlimmerHMM_glimmerT_14376-T1
Valid prediction for GlimmerHMM_glimmerT_14360-T1
Valid prediction for GlimmerHMM_glimmerT_14375-T1
Valid prediction for GlimmerHMM_glimmerT_14379-T1
Valid prediction for snap_scaffold_6-snap.865-T1
Valid prediction for snap_scaffold_6-snap.855-T1
Valid prediction for Augustus_model.g9531.t1
Valid prediction for snap_scaffold_6-snap.883-T1
Valid prediction for Augustus_model.g9522.t1
Valid prediction for snap_scaffold_6-snap.864-T1
Valid prediction for GlimmerHMM_glimmerT_14380-T1
Valid prediction for snap_scaffold_6-snap.870-T1
Valid prediction for GlimmerHMM_glimmerT_14362-T1
Valid prediction for snap_scaffold_6-snap.889-T1
Valid prediction for GlimmerHMM_glimmerT_14378-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6700, rend_intergenic: 3615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10287, rend_intergenic: 6969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59851, rend_intergenic: 25410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62112, rend_intergenic: 60636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78230, rend_intergenic: 72693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80645, rend_intergenic: 78946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83414, rend_intergenic: 80820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86686, rend_intergenic: 85698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88163, rend_intergenic: 86755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90652, rend_intergenic: 88375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94386, rend_intergenic: 90888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99417, rend_intergenic: 95761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113687, rend_intergenic: 106714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133149, rend_intergenic: 126826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 134584
-exon list size: 338


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.0    
5.3    
5.6    
5.9    
6.2    
6.5    
6.8    
7.1    
7.4    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
10.0    
10.3    
10.6    
10.9    
11.2    
11.5    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.6    
17.9    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.1    
32.4    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.6    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.4    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.6    
67.9    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.2    
76.5    
76.8    
77.1    
77.4    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.1    
82.4    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.5    
88.8    
89.1    
89.4    
89.7    
90.0    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.6    
92.9    
93.2    
93.5    
93.8    
94.1    
94.4    
94.7    
95.0    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 6700, rend_intergenic: 3615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10287, rend_intergenic: 6969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59851, rend_intergenic: 25410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62112, rend_intergenic: 60636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78230, rend_intergenic: 72693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80645, rend_intergenic: 78946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83414, rend_intergenic: 80820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86686, rend_intergenic: 85698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88163, rend_intergenic: 86755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90652, rend_intergenic: 88375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94386, rend_intergenic: 90888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99417, rend_intergenic: 95761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113687, rend_intergenic: 106714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133149, rend_intergenic: 126826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support