-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_6/scaffold_6_2112593-2342770

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_14153-T1
Valid prediction for snap_scaffold_6-snap.492-T1
Valid prediction for GlimmerHMM_glimmerT_14139-T1
Valid prediction for snap_scaffold_6-snap.520-T1
Valid prediction for GlimmerHMM_glimmerT_14143-T1
Valid prediction for snap_scaffold_6-snap.499-T1
Valid prediction for snap_scaffold_6-snap.497-T1
Valid prediction for snap_scaffold_6-snap.515-T1
Valid prediction for snap_scaffold_6-snap.519-T1
Valid prediction for snap_scaffold_6-snap.535-T1
Valid prediction for snap_scaffold_6-snap.496-T1
Valid prediction for snap_scaffold_6-snap.504-T1
Valid prediction for snap_scaffold_6-snap.512-T1
Valid prediction for snap_scaffold_6-snap.532-T1
Valid prediction for snap_scaffold_6-snap.509-T1
Valid prediction for GlimmerHMM_glimmerT_14149-T1
Valid prediction for snap_scaffold_6-snap.517-T1
Valid prediction for GlimmerHMM_glimmerT_14156-T1
Valid prediction for Augustus_model.g9383.t1
Valid prediction for snap_scaffold_6-snap.528-T1
Valid prediction for GlimmerHMM_glimmerT_14154-T1
Valid prediction for snap_scaffold_6-snap.526-T1
Valid prediction for GlimmerHMM_glimmerT_14140-T1
Valid prediction for snap_scaffold_6-snap.489-T1
Valid prediction for snap_scaffold_6-snap.503-T1
Valid prediction for snap_scaffold_6-snap.513-T1
Valid prediction for snap_scaffold_6-snap.525-T1
Valid prediction for GlimmerHMM_glimmerT_14150-T1
Valid prediction for GlimmerHMM_glimmerT_14152-T1
Valid prediction for Augustus_model.g9386.t1
Valid prediction for GlimmerHMM_glimmerT_14141-T1
Valid prediction for GlimmerHMM_glimmerT_14151-T1
Valid prediction for snap_scaffold_6-snap.523-T1
Valid prediction for snap_scaffold_6-snap.510-T1
Valid prediction for GlimmerHMM_glimmerT_14147-T1
Valid prediction for snap_scaffold_6-snap.490-T1
Valid prediction for snap_scaffold_6-snap.493-T1
Valid prediction for snap_scaffold_6-snap.524-T1
Valid prediction for snap_scaffold_6-snap.495-T1
Valid prediction for snap_scaffold_6-snap.501-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_14146-T1
Valid prediction for snap_scaffold_6-snap.491-T1
Valid prediction for snap_scaffold_6-snap.516-T1
Valid prediction for snap_scaffold_6-snap.527-T1
Valid prediction for GlimmerHMM_glimmerT_14148-T1
Valid prediction for snap_scaffold_6-snap.508-T1
Valid prediction for GlimmerHMM_glimmerT_14142-T1
Valid prediction for GlimmerHMM_glimmerT_14144-T1
Valid prediction for snap_scaffold_6-snap.500-T1
Valid prediction for GlimmerHMM_glimmerT_14145-T1
Valid prediction for snap_scaffold_6-snap.506-T1
Valid prediction for snap_scaffold_6-snap.531-T1
Valid prediction for snap_scaffold_6-snap.529-T1
Valid prediction for snap_scaffold_6-snap.530-T1
Valid prediction for snap_scaffold_6-snap.522-T1
Valid prediction for Augustus_model.g9385.t1
Valid prediction for snap_scaffold_6-snap.507-T1
Valid prediction for snap_scaffold_6-snap.518-T1
Valid prediction for GlimmerHMM_glimmerT_14155-T1
Valid prediction for snap_scaffold_6-snap.494-T1
Valid prediction for snap_scaffold_6-snap.498-T1
Valid prediction for snap_scaffold_6-snap.533-T1
Valid prediction for snap_scaffold_6-snap.511-T1
Valid prediction for snap_scaffold_6-snap.534-T1
Valid prediction for snap_scaffold_6-snap.514-T1
Valid prediction for snap_scaffold_6-snap.505-T1
Valid prediction for Augustus_model.g9384.t1
Valid prediction for snap_scaffold_6-snap.502-T1
Valid prediction for snap_scaffold_6-snap.536-T1
Valid prediction for GlimmerHMM_glimmerT_14157-T1
Valid prediction for snap_scaffold_6-snap.521-T1
Valid prediction for GlimmerHMM_glimmerT_14158-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 29131, rend_intergenic: 20494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38639, rend_intergenic: 37832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49363, rend_intergenic: 38974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52280, rend_intergenic: 50584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54223, rend_intergenic: 53464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59806, rend_intergenic: 54572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62293, rend_intergenic: 60471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72131, rend_intergenic: 63297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82273, rend_intergenic: 72269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110013, rend_intergenic: 82985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122002, rend_intergenic: 110946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125537, rend_intergenic: 122402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133979, rend_intergenic: 128111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145005, rend_intergenic: 140579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160377, rend_intergenic: 145309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164847, rend_intergenic: 161179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180860, rend_intergenic: 164927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185588, rend_intergenic: 181196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195858, rend_intergenic: 190143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198643, rend_intergenic: 196448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208133, rend_intergenic: 198680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212395, rend_intergenic: 209993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218775, rend_intergenic: 213489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224276, rend_intergenic: 219034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227969, rend_intergenic: 226078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 230178
-exon list size: 280


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.3    
4.6    
5.0    
5.3    
5.7    
6.0    
6.4    
6.7    
7.1    
7.4    
7.8    
8.2    
8.5    
8.9    
9.2    
9.6    
9.9    
10.3    
10.6    
11.0    
11.3    
11.7    
12.1    
12.4    
12.8    
13.1    
13.5    
13.8    
14.2    
14.5    
14.9    
15.2    
15.6    
16.0    
16.3    
16.7    
17.0    
17.4    
17.7    
18.1    
18.4    
18.8    
19.1    
19.5    
19.9    
20.2    
20.6    
20.9    
21.3    
21.6    
22.0    
22.3    
22.7    
23.0    
23.4    
23.8    
24.1    
24.5    
24.8    
25.2    
25.5    
25.9    
26.2    
26.6    
27.0    
27.3    
27.7    
28.0    
28.4    
28.7    
29.1    
29.4    
29.8    
30.1    
30.5    
30.9    
31.2    
31.6    
31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.0    
34.4    
34.8    
35.1    
35.5    
35.8    
36.2    
36.5    
36.9    
37.2    
37.6    
37.9    
38.3    
38.7    
39.0    
39.4    
39.7    
40.1    
40.4    
40.8    
41.1    
41.5    
41.8    
42.2    
42.6    
42.9    
43.3    
43.6    
44.0    
44.3    
44.7    
45.0    
45.4    
45.7    
46.1    
46.5    
46.8    
47.2    
47.5    
47.9    
48.2    
48.6    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.4    
51.8    
52.1    
52.5    
52.8    
53.2    
53.5    
53.9    
54.3    
54.6    
55.0    
55.3    
55.7    
56.0    
56.4    
56.7    
57.1    
57.4    
57.8    
58.2    
58.5    
58.9    
59.2    
59.6    
59.9    
60.3    
60.6    
61.0    
61.3    
61.7    
62.1    
62.4    
62.8    
63.1    
63.5    
63.8    
64.2    
64.5    
64.9    
65.2    
65.6    
66.0    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.4    
68.8    
69.1    
69.5    
69.9    
70.2    
70.6    
70.9    
71.3    
71.6    
72.0    
72.3    
72.7    
73.0    
73.4    
73.8    
74.1    
74.5    
74.8    
75.2    
75.5    
75.9    
76.2    
76.6    
77.0    
77.3    
77.7    
78.0    
78.4    
78.7    
79.1    
79.4    
79.8    
80.1    
80.5    
80.9    
81.2    
81.6    
81.9    
82.3    
82.6    
83.0    
83.3    
83.7    
84.0    
84.4    
84.8    
85.1    
85.5    
85.8    
86.2    
86.5    
86.9    
87.2    
87.6    
87.9    
88.3    
88.7    
89.0    
89.4    
89.7    
90.1    
90.4    
90.8    
91.1    
91.5    
91.8    
92.2    
92.6    
92.9    
93.3    
93.6    
94.0    
94.3    
94.7    
95.0    
95.4    
95.7    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 29131, rend_intergenic: 20494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38639, rend_intergenic: 37832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49363, rend_intergenic: 38974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52280, rend_intergenic: 50584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54223, rend_intergenic: 53464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59806, rend_intergenic: 54572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62293, rend_intergenic: 60471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72131, rend_intergenic: 63297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82273, rend_intergenic: 72269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110013, rend_intergenic: 82985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122002, rend_intergenic: 110946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125537, rend_intergenic: 122402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133979, rend_intergenic: 128111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145005, rend_intergenic: 140579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160377, rend_intergenic: 145309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164847, rend_intergenic: 161179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180860, rend_intergenic: 164927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185588, rend_intergenic: 181196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195858, rend_intergenic: 190143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198643, rend_intergenic: 196448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208133, rend_intergenic: 198680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212395, rend_intergenic: 209993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218775, rend_intergenic: 213489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224276, rend_intergenic: 219034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227969, rend_intergenic: 226078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support