-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_6/scaffold_6_1846509-2114721

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.488-T1
Valid prediction for Augustus_model.g9377.t1
Valid prediction for snap_scaffold_6-snap.448-T1
Valid prediction for snap_scaffold_6-snap.480-T1
Valid prediction for GlimmerHMM_glimmerT_14136-T1
Valid prediction for snap_scaffold_6-snap.481-T1
Valid prediction for GlimmerHMM_glimmerT_14116-T1
Couldn't classify 38286, 38855
Sorry, prediction pasa_asmbl_46749.p1 fails validation.
(GGT)	 GA	38286-38855	GA	TGG
Valid prediction for snap_scaffold_6-snap.442-T1
Valid prediction for GlimmerHMM_glimmerT_14122-T1
Valid prediction for Augustus_model.g9369.t1
Valid prediction for snap_scaffold_6-snap.430-T1
Valid prediction for GlimmerHMM_glimmerT_14108-T1
Valid prediction for snap_scaffold_6-snap.454-T1
Valid prediction for Augustus_model.g9367.t1
Valid prediction for snap_scaffold_6-snap.468-T1
Valid prediction for GlimmerHMM_glimmerT_14124-T1
Valid prediction for snap_scaffold_6-snap.431-T1
Valid prediction for Augustus_model.g9366.t1
Valid prediction for GlimmerHMM_glimmerT_14110-T1
Valid prediction for snap_scaffold_6-snap.472-T1
Valid prediction for snap_scaffold_6-snap.476-T1
Valid prediction for GlimmerHMM_glimmerT_14129-T1
Valid prediction for snap_scaffold_6-snap.486-T1
Valid prediction for snap_scaffold_6-snap.465-T1
Valid prediction for snap_scaffold_6-snap.434-T1
Valid prediction for snap_scaffold_6-snap.432-T1
Valid prediction for snap_scaffold_6-snap.452-T1
Valid prediction for snap_scaffold_6-snap.445-T1
Valid prediction for snap_scaffold_6-snap.467-T1
Valid prediction for snap_scaffold_6-snap.479-T1
Valid prediction for snap_scaffold_6-snap.485-T1
Valid prediction for GlimmerHMM_glimmerT_14109-T1
Valid prediction for Augustus_model.g9375.t1
Valid prediction for snap_scaffold_6-snap.437-T1
Valid prediction for snap_scaffold_6-snap.466-T1
Valid prediction for GlimmerHMM_glimmerT_14138-T1
Valid prediction for GlimmerHMM_glimmerT_14111-T1
Valid prediction for GlimmerHMM_glimmerT_14115-T1
Valid prediction for snap_scaffold_6-snap.484-T1
Valid prediction for GlimmerHMM_glimmerT_14117-T1
Valid prediction for snap_scaffold_6-snap.470-T1
Valid prediction for Augustus_model.g9370.t1
Valid prediction for snap_scaffold_6-snap.436-T1
Valid prediction for snap_scaffold_6-snap.478-T1
Valid prediction for snap_scaffold_6-snap.453-T1
Valid prediction for Augustus_model.g9368.t1
Valid prediction for GlimmerHMM_glimmerT_14127-T1
Valid prediction for GlimmerHMM_glimmerT_14137-T1
Valid prediction for snap_scaffold_6-snap.460-T1
Valid prediction for Augustus_model.g9371.t1
Valid prediction for snap_scaffold_6-snap.449-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_14112-T1
Valid prediction for Augustus_model.g9381.t1
Valid prediction for snap_scaffold_6-snap.483-T1
Valid prediction for Augustus_model.g9380.t1
Valid prediction for GlimmerHMM_glimmerT_14135-T1
Valid prediction for GlimmerHMM_glimmerT_14130-T1
Valid prediction for GlimmerHMM_glimmerT_14118-T1
Valid prediction for GlimmerHMM_glimmerT_14121-T1
Valid prediction for snap_scaffold_6-snap.433-T1
Valid prediction for Augustus_model.g9378.t1
Valid prediction for GlimmerHMM_glimmerT_14128-T1
Valid prediction for GlimmerHMM_glimmerT_14134-T1
Valid prediction for GlimmerHMM_glimmerT_14120-T1
Valid prediction for snap_scaffold_6-snap.444-T1
Valid prediction for GlimmerHMM_glimmerT_14126-T1
Valid prediction for snap_scaffold_6-snap.477-T1
Valid prediction for snap_scaffold_6-snap.471-T1
Valid prediction for snap_scaffold_6-snap.469-T1
Valid prediction for GlimmerHMM_glimmerT_14114-T1
Valid prediction for snap_scaffold_6-snap.447-T1
Valid prediction for snap_scaffold_6-snap.446-T1
Valid prediction for Augustus_model.g9382.t1
Valid prediction for snap_scaffold_6-snap.475-T1
Valid prediction for snap_scaffold_6-snap.455-T1
Valid prediction for GlimmerHMM_glimmerT_14113-T1
Valid prediction for Augustus_model.g9373.t1
Valid prediction for snap_scaffold_6-snap.440-T1
Valid prediction for Augustus_model.g9372.t1
Valid prediction for GlimmerHMM_glimmerT_14131-T1
Valid prediction for snap_scaffold_6-snap.457-T1
Valid prediction for Augustus_model.g9374.t1
Valid prediction for Augustus_model.g9376.t1
Valid prediction for snap_scaffold_6-snap.474-T1
Valid prediction for snap_scaffold_6-snap.456-T1
Valid prediction for GlimmerHMM_glimmerT_14123-T1
Valid prediction for GlimmerHMM_glimmerT_14133-T1
Valid prediction for snap_scaffold_6-snap.459-T1
Valid prediction for GlimmerHMM_glimmerT_14119-T1
Valid prediction for snap_scaffold_6-snap.439-T1
Valid prediction for snap_scaffold_6-snap.463-T1
Valid prediction for GlimmerHMM_glimmerT_14125-T1
Valid prediction for snap_scaffold_6-snap.438-T1
Valid prediction for snap_scaffold_6-snap.461-T1
Valid prediction for snap_scaffold_6-snap.464-T1
Valid prediction for snap_scaffold_6-snap.443-T1
Valid prediction for snap_scaffold_6-snap.435-T1
Valid prediction for snap_scaffold_6-snap.458-T1
Valid prediction for snap_scaffold_6-snap.482-T1
Valid prediction for snap_scaffold_6-snap.473-T1
Valid prediction for snap_scaffold_6-snap.462-T1
Valid prediction for Augustus_model.g9379.t1
Valid prediction for snap_scaffold_6-snap.441-T1
Valid prediction for GlimmerHMM_glimmerT_14132-T1
Valid prediction for snap_scaffold_6-snap.450-T1
Valid prediction for snap_scaffold_6-snap.451-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11649, rend_intergenic: 9381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19615, rend_intergenic: 11703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25836, rend_intergenic: 19619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38359, rend_intergenic: 26074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67656, rend_intergenic: 43853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71703, rend_intergenic: 67670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77434, rend_intergenic: 71862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89247, rend_intergenic: 79459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92309, rend_intergenic: 89615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104385, rend_intergenic: 96851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111623, rend_intergenic: 105293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119869, rend_intergenic: 111759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145418, rend_intergenic: 124538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146383, rend_intergenic: 146207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160163, rend_intergenic: 146433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169559, rend_intergenic: 161261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188756, rend_intergenic: 188188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190368, rend_intergenic: 189181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196001, rend_intergenic: 190896  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198926, rend_intergenic: 196320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204045, rend_intergenic: 199050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237643, rend_intergenic: 204834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251265, rend_intergenic: 237702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256459, rend_intergenic: 251425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 268213
-exon list size: 424


building trellis

0.2    
0.5    
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0.9    
1.2    
1.4    
1.6    
1.9    
2.1    
2.3    
2.6    
2.8    
3.1    
3.3    
3.5    
3.8    
4.0    
4.2    
4.5    
4.7    
4.9    
5.2    
5.4    
5.6    
5.9    
6.1    
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6.6    
6.8    
7.0    
7.3    
7.5    
7.7    
8.0    
8.2    
8.5    
8.7    
8.9    
9.2    
9.4    
9.6    
9.9    
10.1    
10.3    
10.6    
10.8    
11.0    
11.3    
11.5    
11.7    
12.0    
12.2    
12.4    
12.7    
12.9    
13.1    
13.4    
13.6    
13.8    
14.1    
14.3    
14.6    
14.8    
15.0    
15.3    
15.5    
15.7    
16.0    
16.2    
16.4    
16.7    
16.9    
17.1    
17.4    
17.6    
17.8    
18.1    
18.3    
18.5    
18.8    
19.0    
19.2    
19.5    
19.7    
20.0    
20.2    
20.4    
20.7    
20.9    
21.1    
21.4    
21.6    
21.8    
22.1    
22.3    
22.5    
22.8    
23.0    
23.2    
23.5    
23.7    
23.9    
24.2    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.8    
26.1    
26.3    
26.5    
26.8    
27.0    
27.2    
27.5    
27.7    
27.9    
28.2    
28.4    
28.6    
28.9    
29.1    
29.3    
29.6    
29.8    
30.0    
30.3    
30.5    
30.8    
31.0    
31.2    
31.5    
31.7    
31.9    
32.2    
32.4    
32.6    
32.9    
33.1    
33.3    
33.6    
33.8    
34.0    
34.3    
34.5    
34.7    
35.0    
35.2    
35.4    
35.7    
35.9    
36.2    
36.4    
36.6    
36.9    
37.1    
37.3    
37.6    
37.8    
38.0    
38.3    
38.5    
38.7    
39.0    
39.2    
39.4    
39.7    
39.9    
40.1    
40.4    
40.6    
40.8    
41.1    
41.3    
41.5    
41.8    
42.0    
42.3    
42.5    
42.7    
43.0    
43.2    
43.4    
43.7    
43.9    
44.1    
44.4    
44.6    
44.8    
45.1    
45.3    
45.5    
45.8    
46.0    
46.2    
46.5    
46.7    
46.9    
47.2    
47.4    
47.7    
47.9    
48.1    
48.4    
48.6    
48.8    
49.1    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
50.9    
51.2    
51.4    
51.6    
51.9    
52.1    
52.3    
52.6    
52.8    
53.1    
53.3    
53.5    
53.8    
54.0    
54.2    
54.5    
54.7    
54.9    
55.2    
55.4    
55.6    
55.9    
56.1    
56.3    
56.6    
56.8    
57.0    
57.3    
57.5    
57.7    
58.0    
58.2    
58.5    
58.7    
58.9    
59.2    
59.4    
59.6    
59.9    
60.1    
60.3    
60.6    
60.8    
61.0    
61.3    
61.5    
61.7    
62.0    
62.2    
62.4    
62.7    
62.9    
63.1    
63.4    
63.6    
63.8    
64.1    
64.3    
64.6    
64.8    
65.0    
65.3    
65.5    
65.7    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.4    
67.6    
67.8    
68.1    
68.3    
68.5    
68.8    
69.0    
69.2    
69.5    
69.7    
70.0    
70.2    
70.4    
70.7    
70.9    
71.1    
71.4    
71.6    
71.8    
72.1    
72.3    
72.5    
72.8    
73.0    
73.2    
73.5    
73.7    
73.9    
74.2    
74.4    
74.6    
74.9    
75.1    
75.4    
75.6    
75.8    
76.1    
76.3    
76.5    
76.8    
77.0    
77.2    
77.5    
77.7    
77.9    
78.2    
78.4    
78.6    
78.9    
79.1    
79.3    
79.6    
79.8    
80.0    
80.3    
80.5    
80.8    
81.0    
81.2    
81.5    
81.7    
81.9    
82.2    
82.4    
82.6    
82.9    
83.1    
83.3    
83.6    
83.8    
84.0    
84.3    
84.5    
84.7    
85.0    
85.2    
85.4    
85.7    
85.9    
86.2    
86.4    
86.6    
86.9    
87.1    
87.3    
87.6    
87.8    
88.0    
88.3    
88.5    
88.7    
89.0    
89.2    
89.4    
89.7    
89.9    
90.1    
90.4    
90.6    
90.8    
91.1    
91.3    
91.5    
91.8    
92.0    
92.3    
92.5    
92.7    
93.0    
93.2    
93.4    
93.7    
93.9    
94.1    
94.4    
94.6    
94.8    
95.1    
95.3    
95.5    
95.8    
96.0    
96.2    
96.5    
96.7    
96.9    
97.2    
97.4    
97.7    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 46 predictions from path traversal
Error with prediction: snap lend_intergenic: 11649, rend_intergenic: 9381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19615, rend_intergenic: 11703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25836, rend_intergenic: 19619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38359, rend_intergenic: 26074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67656, rend_intergenic: 43853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71703, rend_intergenic: 67670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77434, rend_intergenic: 71862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89247, rend_intergenic: 79459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92309, rend_intergenic: 89615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104385, rend_intergenic: 96851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111623, rend_intergenic: 105293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119869, rend_intergenic: 111759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145418, rend_intergenic: 124538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146383, rend_intergenic: 146207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160163, rend_intergenic: 146433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169559, rend_intergenic: 161261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188756, rend_intergenic: 188188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190368, rend_intergenic: 189181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196001, rend_intergenic: 190896  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198926, rend_intergenic: 196320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204045, rend_intergenic: 199050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237643, rend_intergenic: 204834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251265, rend_intergenic: 237702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256459, rend_intergenic: 251425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support