-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_6/scaffold_6_15884387-16026739

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.3371-T1
Valid prediction for snap_scaffold_6-snap.3379-T1
Valid prediction for snap_scaffold_6-snap.3344-T1
Valid prediction for snap_scaffold_6-snap.3367-T1
Valid prediction for GlimmerHMM_glimmerT_16177-T1
Valid prediction for snap_scaffold_6-snap.3349-T1
Valid prediction for GlimmerHMM_glimmerT_16192-T1
Valid prediction for Augustus_model.g10866.t1
Valid prediction for GlimmerHMM_glimmerT_16176-T1
Valid prediction for GlimmerHMM_glimmerT_16187-T1
Valid prediction for GlimmerHMM_glimmerT_16184-T1
Valid prediction for snap_scaffold_6-snap.3366-T1
Valid prediction for GlimmerHMM_glimmerT_16181-T1
Valid prediction for snap_scaffold_6-snap.3378-T1
Valid prediction for GlimmerHMM_glimmerT_16194-T1
Valid prediction for GlimmerHMM_glimmerT_16179-T1
Valid prediction for snap_scaffold_6-snap.3351-T1
Valid prediction for Augustus_model.g10864.t1
Valid prediction for snap_scaffold_6-snap.3361-T1
Valid prediction for snap_scaffold_6-snap.3355-T1
Valid prediction for snap_scaffold_6-snap.3368-T1
Valid prediction for GlimmerHMM_glimmerT_16186-T1
Valid prediction for snap_scaffold_6-snap.3372-T1
Valid prediction for snap_scaffold_6-snap.3380-T1
Valid prediction for snap_scaffold_6-snap.3363-T1
Valid prediction for snap_scaffold_6-snap.3356-T1
Valid prediction for Augustus_model.g10865.t1
Valid prediction for GlimmerHMM_glimmerT_16191-T1
Valid prediction for snap_scaffold_6-snap.3377-T1
Valid prediction for snap_scaffold_6-snap.3346-T1
Valid prediction for Augustus_model.g10873.t1
Valid prediction for Augustus_model.g10871.t1
Valid prediction for GlimmerHMM_glimmerT_16173-T1
Valid prediction for snap_scaffold_6-snap.3360-T1
Valid prediction for snap_scaffold_6-snap.3357-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_6-snap.3358-T1
Valid prediction for snap_scaffold_6-snap.3347-T1
Valid prediction for GlimmerHMM_glimmerT_16178-T1
Valid prediction for snap_scaffold_6-snap.3370-T1
Valid prediction for Augustus_model.g10872.t1
Valid prediction for snap_scaffold_6-snap.3354-T1
Valid prediction for snap_scaffold_6-snap.3362-T1
Valid prediction for snap_scaffold_6-snap.3373-T1
Valid prediction for GlimmerHMM_glimmerT_16174-T1
Valid prediction for snap_scaffold_6-snap.3374-T1
Valid prediction for snap_scaffold_6-snap.3350-T1
Valid prediction for GlimmerHMM_glimmerT_16175-T1
Couldn't classify 42517, 42561
Couldn't classify 50467, 50517
Sorry, prediction pasa_asmbl_49094.p1 fails validation.
(GTG)	 AA	42517-42561	GT	AGG
(CAG)	 AG	43167-43311	GT	GAG
(GTG)	 AG	44365-44464	GT	TGG
(GGG)	 AG	44668-44801	GT	AGG
(CGT)	 AG	46124-46255	GT	CGG
(TGT)	 AG	47291-47403	GT	AGG
(CAG)	 AG	50230-50349	GT	CCG
(GCC)	 AG	50467-50517	AC	AGA
-recovered pasa_asmbl_49094.p1, internal, 43167, 43311
-recovered pasa_asmbl_49094.p1, internal, 44365, 44464
-recovered pasa_asmbl_49094.p1, internal, 44668, 44801
-recovered pasa_asmbl_49094.p1, internal, 46124, 46255
-recovered pasa_asmbl_49094.p1, internal, 47291, 47403
-recovered pasa_asmbl_49094.p1, internal, 50230, 50349
Couldn't classify 12762, 13082
Sorry, prediction pasa_asmbl_49096.p1 fails validation.
(TTG)	 CA	12762-13082	GT	TGG
Valid prediction for GlimmerHMM_glimmerT_16182-T1
Valid prediction for Augustus_model.g10874.t1
Valid prediction for snap_scaffold_6-snap.3376-T1
Valid prediction for GlimmerHMM_glimmerT_16195-T1
Valid prediction for GlimmerHMM_glimmerT_16189-T1
Valid prediction for snap_scaffold_6-snap.3364-T1
Valid prediction for Augustus_model.g10867.t1
Valid prediction for CodingQuarry_transcript_55371-T1
Valid prediction for snap_scaffold_6-snap.3352-T1
Valid prediction for GlimmerHMM_glimmerT_16193-T1
Valid prediction for snap_scaffold_6-snap.3359-T1
Valid prediction for snap_scaffold_6-snap.3365-T1
Valid prediction for GlimmerHMM_glimmerT_16185-T1
Valid prediction for snap_scaffold_6-snap.3353-T1
Valid prediction for snap_scaffold_6-snap.3369-T1
Valid prediction for pasa_asmbl_49089.p1
Valid prediction for GlimmerHMM_glimmerT_16188-T1
Valid prediction for Augustus_model.g10868.t1
Valid prediction for snap_scaffold_6-snap.3345-T1
Valid prediction for snap_scaffold_6-snap.3348-T1
Valid prediction for GlimmerHMM_glimmerT_16190-T1
Valid prediction for Augustus_model.g10869.t1
Valid prediction for Augustus_model.g10870.t1
Valid prediction for snap_scaffold_6-snap.3343-T1
Valid prediction for snap_scaffold_6-snap.3375-T1
Valid prediction for GlimmerHMM_glimmerT_16183-T1
Valid prediction for GlimmerHMM_glimmerT_16180-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6423, rend_intergenic: 1603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13037, rend_intergenic: 7273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20282, rend_intergenic: 15367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27889, rend_intergenic: 21470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32774, rend_intergenic: 28843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37215, rend_intergenic: 34572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48407, rend_intergenic: 38255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50922, rend_intergenic: 48457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65826, rend_intergenic: 61531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73400, rend_intergenic: 72867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81722, rend_intergenic: 77758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88678, rend_intergenic: 81898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99193, rend_intergenic: 90329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113626, rend_intergenic: 105832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130742, rend_intergenic: 122773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 142353
-exon list size: 326


building trellis

0.3    
0.6    
0.9    
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1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.4    
3.7    
4.0    
4.3    
4.6    
4.9    
5.2    
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5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
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9.8    
10.1    
10.4    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.9    
16.2    
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17.1    
17.4    
17.7    
18.0    
18.3    
18.6    
18.9    
19.2    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
22.0    
22.3    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.5    
34.8    
35.1    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.3    
39.6    
39.9    
40.2    
40.5    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
47.0    
47.3    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.7    
53.0    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.5    
59.8    
60.1    
60.4    
60.7    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
64.9    
65.2    
65.5    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
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70.1    
70.4    
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71.0    
71.3    
71.6    
72.0    
72.3    
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74.4    
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75.0    
75.3    
75.6    
75.9    
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77.1    
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78.0    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.8    
81.1    
81.4    
81.7    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.6    
89.9    
90.2    
90.5    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.3    
96.6    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 6423, rend_intergenic: 1603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13037, rend_intergenic: 7273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20282, rend_intergenic: 15367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27889, rend_intergenic: 21470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32774, rend_intergenic: 28843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37215, rend_intergenic: 34572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48407, rend_intergenic: 38255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50922, rend_intergenic: 48457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65826, rend_intergenic: 61531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73400, rend_intergenic: 72867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81722, rend_intergenic: 77758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88678, rend_intergenic: 81898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99193, rend_intergenic: 90329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113626, rend_intergenic: 105832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130742, rend_intergenic: 122773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support