-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_6/scaffold_6_14902760-15072944

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.3148-T1
Valid prediction for GlimmerHMM_glimmerT_16028-T1
Valid prediction for snap_scaffold_6-snap.3152-T1
Valid prediction for Augustus_model.g10768.t1
Valid prediction for snap_scaffold_6-snap.3158-T1
Valid prediction for snap_scaffold_6-snap.3155-T1
Valid prediction for GlimmerHMM_glimmerT_16017-T1
Valid prediction for snap_scaffold_6-snap.3151-T1
Valid prediction for snap_scaffold_6-snap.3136-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_16026-T1
Valid prediction for GlimmerHMM_glimmerT_16021-T1
Valid prediction for snap_scaffold_6-snap.3154-T1
Valid prediction for snap_scaffold_6-snap.3150-T1
Valid prediction for snap_scaffold_6-snap.3160-T1
Valid prediction for snap_scaffold_6-snap.3147-T1
Valid prediction for snap_scaffold_6-snap.3140-T1
Couldn't classify 18511, 18591
Sorry, prediction pasa_asmbl_47649.p3 fails validation.
(AAC)	 TC	18511-18591	GT	ATG
(GCC)	 AG	19905-20007	GT	AGG
(AGT)	 AG	20786-20926	GT	CTG
(GCC)	 AG	21826-21986	GG	GAG
-recovered pasa_asmbl_47649.p3, terminal, 21826, 21986
-recovered pasa_asmbl_47649.p3, internal, 19905, 20007
-recovered pasa_asmbl_47649.p3, internal, 20786, 20926
Valid prediction for snap_scaffold_6-snap.3132-T1
Valid prediction for Augustus_model.g10775.t1
Valid prediction for snap_scaffold_6-snap.3146-T1
Valid prediction for Augustus_model.g10772.t1
Valid prediction for GlimmerHMM_glimmerT_16034-T1
Valid prediction for snap_scaffold_6-snap.3144-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_6-snap.3170-T1
Valid prediction for GlimmerHMM_glimmerT_16024-T1
Valid prediction for Augustus_model.g10778.t1
Valid prediction for snap_scaffold_6-snap.3162-T1
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_6-snap.3143-T1
Valid prediction for GlimmerHMM_glimmerT_16020-T1
Valid prediction for snap_scaffold_6-snap.3149-T1
Valid prediction for GlimmerHMM_glimmerT_16035-T1
Valid prediction for snap_scaffold_6-snap.3145-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g10770.t1
Valid prediction for snap_scaffold_6-snap.3153-T1
Sorry, intron length (7) is less than minimum required (10)
Couldn't classify 157699, 158082
Sorry, prediction pasa_asmbl_47648.p1 fails validation.
(AGT)	 CT	157699-158082	CA	GAC
Valid prediction for GlimmerHMM_glimmerT_16032-T1
Valid prediction for snap_scaffold_6-snap.3163-T1
Couldn't classify 137224, 137652
Sorry, prediction pasa_asmbl_49044.p1 fails validation.
(CCA)	 TA	137224-137652	AA	AGA
Valid prediction for GlimmerHMM_glimmerT_16019-T1
Valid prediction for snap_scaffold_6-snap.3168-T1
Valid prediction for snap_scaffold_6-snap.3166-T1
Valid prediction for snap_scaffold_6-snap.3159-T1
Valid prediction for snap_scaffold_6-snap.3141-T1
Valid prediction for GlimmerHMM_glimmerT_16031-T1
Valid prediction for GlimmerHMM_glimmerT_16027-T1
Valid prediction for GlimmerHMM_glimmerT_16025-T1
Valid prediction for Augustus_model.g10779.t1
Valid prediction for snap_scaffold_6-snap.3161-T1
Valid prediction for snap_scaffold_6-snap.3171-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_6-snap.3157-T1
Valid prediction for snap_scaffold_6-snap.3134-T1
Valid prediction for GlimmerHMM_glimmerT_16023-T1
Valid prediction for snap_scaffold_6-snap.3164-T1
Valid prediction for snap_scaffold_6-snap.3156-T1
Valid prediction for GlimmerHMM_glimmerT_16037-T1
Valid prediction for GlimmerHMM_glimmerT_16030-T1
Valid prediction for GlimmerHMM_glimmerT_16033-T1
Valid prediction for snap_scaffold_6-snap.3165-T1
Valid prediction for Augustus_model.g10776.t1
Valid prediction for snap_scaffold_6-snap.3169-T1
Valid prediction for Augustus_model.g10771.t1
Valid prediction for Augustus_model.g10773.t1
Valid prediction for Augustus_model.g10769.t1
Valid prediction for Augustus_model.g10777.t1
Valid prediction for snap_scaffold_6-snap.3167-T1
Valid prediction for snap_scaffold_6-snap.3137-T1
Valid prediction for snap_scaffold_6-snap.3142-T1
Valid prediction for snap_scaffold_6-snap.3138-T1
Valid prediction for GlimmerHMM_glimmerT_16036-T1
Valid prediction for GlimmerHMM_glimmerT_16022-T1
Valid prediction for snap_scaffold_6-snap.3139-T1
Valid prediction for Augustus_model.g10774.t1
Valid prediction for snap_scaffold_6-snap.3133-T1
Valid prediction for snap_scaffold_6-snap.3135-T1
Valid prediction for GlimmerHMM_glimmerT_16018-T1
Valid prediction for GlimmerHMM_glimmerT_16029-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21986, rend_intergenic: 11138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27799, rend_intergenic: 25132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50935, rend_intergenic: 45464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67675, rend_intergenic: 62483  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88742, rend_intergenic: 67751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110411, rend_intergenic: 93906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114646, rend_intergenic: 110435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124322, rend_intergenic: 114725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127719, rend_intergenic: 124337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130948, rend_intergenic: 128869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133401, rend_intergenic: 131963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137113, rend_intergenic: 135118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139220, rend_intergenic: 137467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145161, rend_intergenic: 139866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159242, rend_intergenic: 158712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 170185
-exon list size: 294


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.0    
2.4    
2.7    
3.0    
3.4    
3.7    
4.1    
4.4    
4.7    
5.1    
5.4    
5.7    
6.1    
6.4    
6.8    
7.1    
7.4    
7.8    
8.1    
8.4    
8.8    
9.1    
9.5    
9.8    
10.1    
10.5    
10.8    
11.1    
11.5    
11.8    
12.2    
12.5    
12.8    
13.2    
13.5    
13.9    
14.2    
14.5    
14.9    
15.2    
15.5    
15.9    
16.2    
16.6    
16.9    
17.2    
17.6    
17.9    
18.2    
18.6    
18.9    
19.3    
19.6    
19.9    
20.3    
20.6    
20.9    
21.3    
21.6    
22.0    
22.3    
22.6    
23.0    
23.3    
23.6    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.4    
26.7    
27.0    
27.4    
27.7    
28.0    
28.4    
28.7    
29.1    
29.4    
29.7    
30.1    
30.4    
30.7    
31.1    
31.4    
31.8    
32.1    
32.4    
32.8    
33.1    
33.4    
33.8    
34.1    
34.5    
34.8    
35.1    
35.5    
35.8    
36.1    
36.5    
36.8    
37.2    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.5    
39.9    
40.2    
40.5    
40.9    
41.2    
41.6    
41.9    
42.2    
42.6    
42.9    
43.2    
43.6    
43.9    
44.3    
44.6    
44.9    
45.3    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.6    
48.0    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.0    
52.4    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.7    
55.1    
55.4    
55.7    
56.1    
56.4    
56.8    
57.1    
57.4    
57.8    
58.1    
58.4    
58.8    
59.1    
59.5    
59.8    
60.1    
60.5    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.8    
63.2    
63.5    
63.9    
64.2    
64.5    
64.9    
65.2    
65.5    
65.9    
66.2    
66.6    
66.9    
67.2    
67.6    
67.9    
68.2    
68.6    
68.9    
69.3    
69.6    
69.9    
70.3    
70.6    
70.9    
71.3    
71.6    
72.0    
72.3    
72.6    
73.0    
73.3    
73.6    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.4    
76.7    
77.0    
77.4    
77.7    
78.0    
78.4    
78.7    
79.1    
79.4    
79.7    
80.1    
80.4    
80.7    
81.1    
81.4    
81.8    
82.1    
82.4    
82.8    
83.1    
83.4    
83.8    
84.1    
84.5    
84.8    
85.1    
85.5    
85.8    
86.1    
86.5    
86.8    
87.2    
87.5    
87.8    
88.2    
88.5    
88.9    
89.2    
89.5    
89.9    
90.2    
90.5    
90.9    
91.2    
91.6    
91.9    
92.2    
92.6    
92.9    
93.2    
93.6    
93.9    
94.3    
94.6    
94.9    
95.3    
95.6    
95.9    
96.3    
96.6    
97.0    
97.3    
97.6    
98.0    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 21986, rend_intergenic: 11138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27799, rend_intergenic: 25132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50935, rend_intergenic: 45464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67675, rend_intergenic: 62483  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88742, rend_intergenic: 67751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110411, rend_intergenic: 93906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114646, rend_intergenic: 110435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124322, rend_intergenic: 114725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127719, rend_intergenic: 124337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130948, rend_intergenic: 128869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133401, rend_intergenic: 131963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137113, rend_intergenic: 135118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139220, rend_intergenic: 137467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145161, rend_intergenic: 139866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159242, rend_intergenic: 158712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10065
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support