-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_6/scaffold_6_10448014-10686258

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.2299-T1
Valid prediction for snap_scaffold_6-snap.2287-T1
Valid prediction for snap_scaffold_6-snap.2279-T1
Valid prediction for GlimmerHMM_glimmerT_15422-T1
Valid prediction for HiQ_model.g10261.t1
Valid prediction for GlimmerHMM_glimmerT_15399-T1
Valid prediction for snap_scaffold_6-snap.2296-T1
Valid prediction for snap_scaffold_6-snap.2286-T1
Valid prediction for snap_scaffold_6-snap.2274-T1
Valid prediction for Augustus_model.g10259.t1
Valid prediction for snap_scaffold_6-snap.2275-T1
Valid prediction for snap_scaffold_6-snap.2269-T1
Valid prediction for pasa_asmbl_47286.p1
Valid prediction for snap_scaffold_6-snap.2281-T1
Valid prediction for snap_scaffold_6-snap.2294-T1
Valid prediction for snap_scaffold_6-snap.2270-T1
Valid prediction for GlimmerHMM_glimmerT_15417-T1
Valid prediction for snap_scaffold_6-snap.2266-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_6-snap.2271-T1
Valid prediction for snap_scaffold_6-snap.2280-T1
Valid prediction for snap_scaffold_6-snap.2259-T1
Valid prediction for GlimmerHMM_glimmerT_15420-T1
Valid prediction for GlimmerHMM_glimmerT_15404-T1
Valid prediction for snap_scaffold_6-snap.2288-T1
Valid prediction for GlimmerHMM_glimmerT_15407-T1
Valid prediction for GlimmerHMM_glimmerT_15411-T1
Valid prediction for pasa_asmbl_47287.p2
Valid prediction for snap_scaffold_6-snap.2291-T1
Valid prediction for GlimmerHMM_glimmerT_15409-T1
Valid prediction for CodingQuarry_transcript_55209-T1
Valid prediction for snap_scaffold_6-snap.2285-T1
Valid prediction for snap_scaffold_6-snap.2267-T1
Valid prediction for snap_scaffold_6-snap.2297-T1
Valid prediction for Augustus_model.g10252.t1
Valid prediction for snap_scaffold_6-snap.2276-T1
Valid prediction for GlimmerHMM_glimmerT_15402-T1
Valid prediction for snap_scaffold_6-snap.2258-T1
Valid prediction for Augustus_model.g10258.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_15418-T1
Valid prediction for snap_scaffold_6-snap.2277-T1
Valid prediction for Augustus_model.g10264.t1
Valid prediction for pasa_asmbl_48704.p1
Valid prediction for snap_scaffold_6-snap.2256-T1
Valid prediction for GlimmerHMM_glimmerT_15403-T1
Valid prediction for snap_scaffold_6-snap.2264-T1
Valid prediction for Augustus_model.g10257.t1
Valid prediction for GlimmerHMM_glimmerT_15405-T1
Valid prediction for snap_scaffold_6-snap.2272-T1
Valid prediction for snap_scaffold_6-snap.2257-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_15419-T1
Valid prediction for GlimmerHMM_glimmerT_15415-T1
Valid prediction for GlimmerHMM_glimmerT_15398-T1
Valid prediction for Augustus_model.g10254.t1
Valid prediction for Augustus_model.g10268.t1
Valid prediction for snap_scaffold_6-snap.2282-T1
Valid prediction for snap_scaffold_6-snap.2295-T1
Valid prediction for GlimmerHMM_glimmerT_15413-T1
Valid prediction for Augustus_model.g10255.t1
Valid prediction for CodingQuarry_transcript_55207-T1
Valid prediction for GlimmerHMM_glimmerT_15408-T1
Valid prediction for snap_scaffold_6-snap.2265-T1
Valid prediction for snap_scaffold_6-snap.2262-T1
Valid prediction for GlimmerHMM_glimmerT_15401-T1
Valid prediction for Augustus_model.g10262.t1
Valid prediction for snap_scaffold_6-snap.2261-T1
Valid prediction for Augustus_model.g10269.t1
Valid prediction for snap_scaffold_6-snap.2293-T1
Valid prediction for snap_scaffold_6-snap.2283-T1
Valid prediction for snap_scaffold_6-snap.2292-T1
Valid prediction for GlimmerHMM_glimmerT_15410-T1
Valid prediction for GlimmerHMM_glimmerT_15400-T1
Valid prediction for CodingQuarry_transcript_55208-T1
Valid prediction for GlimmerHMM_glimmerT_15412-T1
Valid prediction for Augustus_model.g10260.t1
Valid prediction for pasa_asmbl_48705.p1
Valid prediction for snap_scaffold_6-snap.2290-T1
Couldn't classify 184490, 184525
Sorry, prediction pasa_asmbl_48706.p1 fails validation.
(CTT)	 AA	184490-184525	GT	AGG
(ATA)	 AG	185326-185395	GT	AGG
(CTG)	 AG	185556-185688	GT	AAG
(GCT)	 AG	185945-186054	GT	TGG
(AGT)	 AG	186402-186427	CT	AAC
-recovered pasa_asmbl_48706.p1, terminal, 186402, 186427
-recovered pasa_asmbl_48706.p1, internal, 185326, 185395
-recovered pasa_asmbl_48706.p1, internal, 185556, 185688
-recovered pasa_asmbl_48706.p1, internal, 185945, 186054
Valid prediction for GlimmerHMM_glimmerT_15423-T1
Valid prediction for snap_scaffold_6-snap.2289-T1
Valid prediction for Augustus_model.g10266.t1
Valid prediction for Augustus_model.g10267.t1
Valid prediction for Augustus_model.g10251.t1
Valid prediction for Augustus_model.g10263.t1
Valid prediction for snap_scaffold_6-snap.2260-T1
Valid prediction for snap_scaffold_6-snap.2298-T1
Valid prediction for GlimmerHMM_glimmerT_15414-T1
Valid prediction for snap_scaffold_6-snap.2273-T1
Valid prediction for HiQ_model.g10253.t1
Valid prediction for snap_scaffold_6-snap.2284-T1
Valid prediction for Augustus_model.g10256.t1
Valid prediction for snap_scaffold_6-snap.2268-T1
Valid prediction for snap_scaffold_6-snap.2263-T1
Valid prediction for GlimmerHMM_glimmerT_15416-T1
Valid prediction for Augustus_model.g10265.t1
Valid prediction for snap_scaffold_6-snap.2278-T1
Valid prediction for CodingQuarry_transcript_55206-T1
Valid prediction for GlimmerHMM_glimmerT_15406-T1
Valid prediction for snap_scaffold_6-snap.2300-T1
Valid prediction for GlimmerHMM_glimmerT_15421-T1
Valid prediction for CodingQuarry_transcript_55205-T1
Valid prediction for Augustus_model.g10250.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 72209, rend_intergenic: 68362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111358, rend_intergenic: 108076  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119828, rend_intergenic: 112949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183642, rend_intergenic: 179771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196795, rend_intergenic: 191533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202502, rend_intergenic: 198384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207671, rend_intergenic: 203805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 238245
-exon list size: 350


building trellis

0.3    
0.6    
0.9    
1.1    
1.4    
1.7    
2.0    
2.3    
2.6    
2.8    
3.1    
3.4    
3.7    
4.0    
4.3    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.2    
6.5    
6.8    
7.1    
7.4    
7.7    
8.0    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.0    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.5    
29.8    
30.1    
30.4    
30.7    
31.0    
31.2    
31.5    
31.8    
32.1    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
34.9    
35.2    
35.5    
35.8    
36.1    
36.4    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.0    
42.3    
42.6    
42.9    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.7    
46.0    
46.3    
46.6    
46.9    
47.2    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.8    
53.1    
53.4    
53.7    
54.0    
54.3    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.1    
57.4    
57.7    
58.0    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.6    
63.9    
64.2    
64.5    
64.8    
65.1    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.9    
68.2    
68.5    
68.8    
69.0    
69.3    
69.6    
69.9    
70.2    
70.5    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.0    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.0    
92.3    
92.6    
92.9    
93.2    
93.5    
93.8    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.7    
96.0    
96.3    
96.6    
96.9    
97.2    
97.4    
97.7    
98.0    
98.3    
98.6    
98.9    
99.1    
99.4    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 72209, rend_intergenic: 68362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111358, rend_intergenic: 108076  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119828, rend_intergenic: 112949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183642, rend_intergenic: 179771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196795, rend_intergenic: 191533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202502, rend_intergenic: 198384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207671, rend_intergenic: 203805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support