-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_598

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40074.t1
Valid prediction for GlimmerHMM_glimmerT_60534-T1
Valid prediction for GlimmerHMM_glimmerT_60533-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5268, 5469
Sorry, prediction snap_scaffold_598-snap.1-T1 fails validation.
(ATG)	 AG	1010-1015	GT	AGG
(GGG)	 AG	2283-2654	GT	TGG
(GAG)	 AG	2765-2875	GT	AGG
(AAG)	 AG	4899-5009	GT	GGG
(GTA)	 AG	5268-5469	GT	AAG
-recovered snap_scaffold_598-snap.1-T1, initial, 1010, 1015
-recovered snap_scaffold_598-snap.1-T1, internal, 1010, 1015
-recovered snap_scaffold_598-snap.1-T1, internal, 2283, 2654
-recovered snap_scaffold_598-snap.1-T1, internal, 2765, 2875
-recovered snap_scaffold_598-snap.1-T1, internal, 4899, 5009
-recovered snap_scaffold_598-snap.1-T1, internal, 5268, 5469
Valid prediction for Augustus_model.g40075.t1
Valid prediction for GlimmerHMM_glimmerT_60535-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5513
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support