-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_596

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 41, 357
Couldn't classify 5043, 5114
Sorry, prediction snap_scaffold_596-snap.1-T1 fails validation.
(GGT)	 AG	41-357	GT	GGG
(GAA)	 AG	5043-5114	GT	CGG
-recovered snap_scaffold_596-snap.1-T1, internal, 41, 357
-recovered snap_scaffold_596-snap.1-T1, internal, 5043, 5114

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 107, 193
Sorry, prediction Augustus_model.g40072.t1 fails validation.
(CTG)	 AG	107-193	GT	AGG
(GTG)	 AG	381-567	GT	GGG
(GTG)	 AG	2641-2712	GT	TGG
(TTG)	 AG	3741-3862	CC	GAC
-recovered Augustus_model.g40072.t1, terminal, 3741, 3862
-recovered Augustus_model.g40072.t1, internal, 107, 193
-recovered Augustus_model.g40072.t1, internal, 381, 567
-recovered Augustus_model.g40072.t1, internal, 2641, 2712
Couldn't classify 107, 193
Sorry, prediction snap_scaffold_596-snap.2-T1 fails validation.
(CTG)	 AG	107-193	GT	AGG
(GTG)	 AG	381-578	GT	AGG
(GCA)	 AG	2043-2087	GT	AGG
(GTG)	 AG	2641-2712	GT	TGG
(GGT)	 AG	4646-4687	AG	AGA
-recovered snap_scaffold_596-snap.2-T1, terminal, 4646, 4687
-recovered snap_scaffold_596-snap.2-T1, internal, 107, 193
-recovered snap_scaffold_596-snap.2-T1, internal, 381, 578
-recovered snap_scaffold_596-snap.2-T1, internal, 2043, 2087
-recovered snap_scaffold_596-snap.2-T1, internal, 2641, 2712
Couldn't classify 107, 193
Sorry, prediction GlimmerHMM_glimmerT_60532-T1 fails validation.
(CTG)	 AG	107-193	GT	AGG
(GTG)	 AG	381-567	GT	GGG
(GTG)	 AG	2641-2712	GT	TGG
(CGT)	 AG	3432-3532	TG	AAT
-recovered GlimmerHMM_glimmerT_60532-T1, terminal, 3432, 3532
-recovered GlimmerHMM_glimmerT_60532-T1, internal, 107, 193
-recovered GlimmerHMM_glimmerT_60532-T1, internal, 381, 567
-recovered GlimmerHMM_glimmerT_60532-T1, internal, 2641, 2712
Valid prediction for GlimmerHMM_glimmerT_60531-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5114, rend_intergenic: 853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5539
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5114, rend_intergenic: 853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support