-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_595

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5210, 5325
Sorry, prediction snap_scaffold_595-snap.2-T1 fails validation.
(ATG)	 AG	2215-2320	GT	AGG
(CCC)	 AG	5079-5120	GT	GGG
(AGG)	 AG	5210-5325	GT	AGG
-recovered snap_scaffold_595-snap.2-T1, initial, 2215, 2320
-recovered snap_scaffold_595-snap.2-T1, internal, 2215, 2320
-recovered snap_scaffold_595-snap.2-T1, internal, 5079, 5120
-recovered snap_scaffold_595-snap.2-T1, internal, 5210, 5325
Valid prediction for GlimmerHMM_glimmerT_60530-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60530-T1 1724-1986-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3518, 3747
Sorry, prediction snap_scaffold_595-snap.1-T1 fails validation.
(GCA)	 AG	3518-3747	GT	GGG
(TTG)	 AG	3961-4101	GT	AAG
(TTG)	 AG	4859-4912	TT	GAT
-recovered snap_scaffold_595-snap.1-T1, terminal, 4859, 4912
-recovered snap_scaffold_595-snap.1-T1, internal, 3518, 3747
-recovered snap_scaffold_595-snap.1-T1, internal, 3961, 4101

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5543
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support