-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_592

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60526-T1
Couldn't classify 5167, 5349
Sorry, prediction snap_scaffold_592-snap.2-T1 fails validation.
(ATG)	 TC	474-529	GT	ATG
(AGA)	 AG	661-708	GT	GGG
(ACC)	 AG	864-951	GT	CAG
(GGC)	 AG	1387-1461	GT	AGG
(GTG)	 AG	1625-1786	GT	GGG
(GGC)	 AG	5167-5349	GT	GGG
-recovered snap_scaffold_592-snap.2-T1, initial, 474, 529
-recovered snap_scaffold_592-snap.2-T1, internal, 661, 708
-recovered snap_scaffold_592-snap.2-T1, internal, 864, 951
-recovered snap_scaffold_592-snap.2-T1, internal, 1387, 1461
-recovered snap_scaffold_592-snap.2-T1, internal, 1625, 1786
-recovered snap_scaffold_592-snap.2-T1, internal, 5167, 5349
Couldn't classify 659, 708
Couldn't classify 1780, 1810
Sorry, prediction pasa_asmbl_46620.p1 fails validation.
(AGA)	 TC	659-708	GT	GGG
(ACC)	 AG	864-951	GT	CAG
(GGC)	 AG	1387-1461	GT	AGG
(GTG)	 AG	1625-1734	GT	CTG
(GGA)	 AG	1780-1810	GT	TAG
-recovered pasa_asmbl_46620.p1, internal, 864, 951
-recovered pasa_asmbl_46620.p1, internal, 1387, 1461
-recovered pasa_asmbl_46620.p1, internal, 1625, 1734
-recovered pasa_asmbl_46620.p1, internal, 1780, 1810
Valid prediction for snap_scaffold_592-snap.1-T1
Couldn't classify 189, 367
Sorry, prediction Augustus_model.g40067.t1 fails validation.
(ACG)	 AG	189-367	GT	ATG
(AGA)	 AG	661-708	GT	GGG
(ACC)	 AG	864-951	GT	CAG
(GGC)	 AG	1387-1461	GT	AGG
(GTG)	 AG	1625-1720	GT	CGG
(GGC)	 AG	2172-2207	AG	AAA
-recovered Augustus_model.g40067.t1, terminal, 2172, 2207
-recovered Augustus_model.g40067.t1, internal, 189, 367
-recovered Augustus_model.g40067.t1, internal, 661, 708
-recovered Augustus_model.g40067.t1, internal, 864, 951
-recovered Augustus_model.g40067.t1, internal, 1387, 1461
-recovered Augustus_model.g40067.t1, internal, 1625, 1720

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5571
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support