-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_590

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 59, 191
Sorry, prediction snap_scaffold_590-snap.1-T1 fails validation.
(CGG)	 AG	59-191	GT	AGG
(GTA)	 AG	376-606	AG	GAA
-recovered snap_scaffold_590-snap.1-T1, terminal, 376, 606
-recovered snap_scaffold_590-snap.1-T1, internal, 59, 191
Couldn't classify 5374, 5505
Sorry, prediction Augustus_model.g40066.t1 fails validation.
(ATG)	 TG	2731-2880	GT	AGG
(GTG)	 AG	3222-3407	GT	AGG
(ATC)	 AG	3676-3812	GT	GAG
(TGA)	 AG	4011-4212	GT	TGG
(GTC)	 AG	4500-4659	GT	TGG
(ACC)	 AG	4936-5058	GT	AGG
(GCT)	 AG	5374-5505	GT	AAG
-recovered Augustus_model.g40066.t1, initial, 2731, 2880
add_exon() Sorry, Augustus_model.g40066.t1 3676-3812-terminal-2 is invalid.
-recovered Augustus_model.g40066.t1, terminal, 3676, 3812
-recovered Augustus_model.g40066.t1, internal, 3222, 3407
-recovered Augustus_model.g40066.t1, internal, 3676, 3812
-recovered Augustus_model.g40066.t1, internal, 4011, 4212
-recovered Augustus_model.g40066.t1, internal, 4500, 4659
-recovered Augustus_model.g40066.t1, internal, 4936, 5058
-recovered Augustus_model.g40066.t1, internal, 5374, 5505
Valid prediction for GlimmerHMM_glimmerT_60524-T1
Couldn't classify 5374, 5505
Sorry, prediction snap_scaffold_590-snap.2-T1 fails validation.
(ATG)	 AC	1367-1371	GT	CAG
(AGA)	 AG	1975-2074	GT	CGG
(CGC)	 AG	2710-2880	GT	AGG
(GTG)	 AG	3222-3407	GT	AGG
(ATC)	 AG	3676-3812	GT	GAG
(TGA)	 AG	4011-4191	GT	CAG
(GTC)	 AG	4500-4659	GT	TGG
(ACC)	 AG	4936-5058	GT	AGG
(GCT)	 AG	5374-5505	GT	AAG
-recovered snap_scaffold_590-snap.2-T1, initial, 1367, 1371
add_exon() Sorry, snap_scaffold_590-snap.2-T1 3676-3812-terminal-2 is invalid.
-recovered snap_scaffold_590-snap.2-T1, terminal, 3676, 3812
-recovered snap_scaffold_590-snap.2-T1, internal, 1975, 2074
-recovered snap_scaffold_590-snap.2-T1, internal, 2710, 2880
-recovered snap_scaffold_590-snap.2-T1, internal, 3222, 3407
-recovered snap_scaffold_590-snap.2-T1, internal, 3676, 3812
-recovered snap_scaffold_590-snap.2-T1, internal, 4011, 4191
-recovered snap_scaffold_590-snap.2-T1, internal, 4500, 4659
-recovered snap_scaffold_590-snap.2-T1, internal, 4936, 5058
-recovered snap_scaffold_590-snap.2-T1, internal, 5374, 5505
Couldn't classify 5374, 5449
Sorry, prediction GlimmerHMM_glimmerT_60525-T1 fails validation.
(ATG)	 CC	4021-4191	GT	CAG
(GTC)	 AG	4500-4659	GT	TGG
(ACC)	 AG	4936-5058	GT	AGG
(GCT)	 AG	5374-5449	GT	AGG
-recovered GlimmerHMM_glimmerT_60525-T1, initial, 4021, 4191
-recovered GlimmerHMM_glimmerT_60525-T1, internal, 4500, 4659
-recovered GlimmerHMM_glimmerT_60525-T1, internal, 4936, 5058
-recovered GlimmerHMM_glimmerT_60525-T1, internal, 5374, 5449

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60523-T1
Valid prediction for Augustus_model.g40065.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5577
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support