-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_589

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60521-T1
Valid prediction for snap_scaffold_589-snap.1-T1
Couldn't classify 138, 262
Sorry, prediction Augustus_model.g40063.t1 fails validation.
(ACT)	 AG	138-262	GT	ATG
(GAG)	 AG	441-597	GT	AGG
(GGG)	 AG	839-1050	CT	GAC
-recovered Augustus_model.g40063.t1, terminal, 839, 1050
-recovered Augustus_model.g40063.t1, internal, 138, 262
-recovered Augustus_model.g40063.t1, internal, 441, 597

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 38, 176
Sorry, prediction GlimmerHMM_glimmerT_60522-T1 fails validation.
(GCT)	 AG	38-176	GT	AAG
(CGT)	 AG	1958-2075	GT	GGG
(TTC)	 AG	2177-2482	GA	AGG
-recovered GlimmerHMM_glimmerT_60522-T1, terminal, 38, 176
-recovered GlimmerHMM_glimmerT_60522-T1, terminal, 2177, 2482
-recovered GlimmerHMM_glimmerT_60522-T1, internal, 38, 176
-recovered GlimmerHMM_glimmerT_60522-T1, internal, 1958, 2075
Couldn't classify 38, 176
Sorry, prediction snap_scaffold_589-snap.2-T1 fails validation.
(GCT)	 AG	38-176	GT	AAG
(CGT)	 AG	1958-2075	GT	GGG
(TTC)	 AG	2177-2482	GA	AGG
-recovered snap_scaffold_589-snap.2-T1, terminal, 38, 176
-recovered snap_scaffold_589-snap.2-T1, terminal, 2177, 2482
-recovered snap_scaffold_589-snap.2-T1, internal, 38, 176
-recovered snap_scaffold_589-snap.2-T1, internal, 1958, 2075
Couldn't classify 37, 176
Sorry, prediction pasa_asmbl_46616.p1 fails validation.
(GGC)	 TA	37-176	GT	AAG
(CGT)	 AG	1958-2075	GT	GGG
(TTC)	 AG	2177-2482	GA	AGG
-recovered pasa_asmbl_46616.p1, terminal, 2177, 2482
-recovered pasa_asmbl_46616.p1, internal, 1958, 2075
Valid prediction for HiQ_model.g40064.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5579
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support