-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_587

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40060.t1
Valid prediction for GlimmerHMM_glimmerT_60518-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60519-T1
Couldn't classify 5175, 5318
Sorry, prediction snap_scaffold_587-snap.1-T1 fails validation.
(ATG)	 GG	4234-4256	GT	AGG
(GAG)	 AG	5046-5073	GT	AGG
(ACG)	 AG	5175-5318	GT	AAG
-recovered snap_scaffold_587-snap.1-T1, initial, 4234, 4256
-recovered snap_scaffold_587-snap.1-T1, internal, 5046, 5073
-recovered snap_scaffold_587-snap.1-T1, internal, 5175, 5318
Couldn't classify 50, 271
Sorry, prediction snap_scaffold_587-snap.2-T1 fails validation.
(GTG)	 AG	50-271	GT	CGG
(AGG)	 AG	3251-3397	GT	AGG
(GTG)	 AG	3827-3955	TC	GAT
-recovered snap_scaffold_587-snap.2-T1, terminal, 3827, 3955
-recovered snap_scaffold_587-snap.2-T1, internal, 50, 271
-recovered snap_scaffold_587-snap.2-T1, internal, 3251, 3397
Valid prediction for Augustus_model.g40061.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5615
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support