-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_584

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5511, 5619
Sorry, prediction GlimmerHMM_glimmerT_60516-T1 fails validation.
(ATG)	 TC	4284-4363	GT	CTG
(GAA)	 AG	5511-5619		GG
-recovered GlimmerHMM_glimmerT_60516-T1, initial, 4284, 4363
Valid prediction for GlimmerHMM_glimmerT_60515-T1
Couldn't classify 206, 346
Couldn't classify 5511, 5580
Sorry, prediction snap_scaffold_584-snap.2-T1 fails validation.
(GAT)	 AG	206-346	GT	TGG
(AAG)	 AG	1065-1237	GT	GGG
(TGG)	 AG	1638-1772	GT	AGG
(TGT)	 AG	4774-4910	GT	GGG
(GAA)	 AG	5511-5580	GT	GCG
-recovered snap_scaffold_584-snap.2-T1, internal, 206, 346
-recovered snap_scaffold_584-snap.2-T1, internal, 1065, 1237
-recovered snap_scaffold_584-snap.2-T1, internal, 1638, 1772
-recovered snap_scaffold_584-snap.2-T1, internal, 4774, 4910
-recovered snap_scaffold_584-snap.2-T1, internal, 5511, 5580

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4944, 5449
Sorry, prediction snap_scaffold_584-snap.1-T1 fails validation.
(ATG)	 AG	3886-4007	GT	GTG
(AGC)	 AG	4461-4549	GT	CGG
(GAG)	 AG	4944-5449	GT	CTG
-recovered snap_scaffold_584-snap.1-T1, initial, 3886, 4007
-recovered snap_scaffold_584-snap.1-T1, internal, 3886, 4007
-recovered snap_scaffold_584-snap.1-T1, internal, 4461, 4549
-recovered snap_scaffold_584-snap.1-T1, internal, 4944, 5449

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1734, rend_intergenic: 206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5619
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 1734, rend_intergenic: 206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support