-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_582

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4072, 4119
Couldn't classify 5105, 5213
Sorry, prediction pasa_asmbl_46612.p1 fails validation.
(CAG)	 CT	4072-4119	GT	ACG
(CTG)	 AG	4666-4820	GT	CGG
(GAT)	 AG	5105-5213	TG	GGT
-recovered pasa_asmbl_46612.p1, internal, 4666, 4820
Couldn't classify 5105, 5212
Sorry, prediction GlimmerHMM_glimmerT_60514-T1 fails validation.
(ATG)	 AA	2158-2178	GT	AGG
(CTG)	 AG	4666-4820	GT	CGG
(GAT)	 AG	5105-5212	GT	AGG
-recovered GlimmerHMM_glimmerT_60514-T1, initial, 2158, 2178
-recovered GlimmerHMM_glimmerT_60514-T1, internal, 4666, 4820
-recovered GlimmerHMM_glimmerT_60514-T1, internal, 5105, 5212
Couldn't classify 5105, 5212
Sorry, prediction snap_scaffold_582-snap.2-T1 fails validation.
(ATG)	 AC	2001-2178	GT	AGG
(GGG)	 AG	2990-3027	GT	AAG
(CTG)	 AG	4666-4820	GT	CGG
(GAT)	 AG	5105-5212	GT	AGG
-recovered snap_scaffold_582-snap.2-T1, initial, 2001, 2178
-recovered snap_scaffold_582-snap.2-T1, internal, 2990, 3027
-recovered snap_scaffold_582-snap.2-T1, internal, 4666, 4820
-recovered snap_scaffold_582-snap.2-T1, internal, 5105, 5212
Couldn't classify 5105, 5212
Sorry, prediction Augustus_model.g40058.t1 fails validation.
(ATG)	 AC	2001-2178	GT	AGG
(GGG)	 AG	2990-3027	GT	AAG
(CTG)	 AG	4666-4820	GT	CGG
(GAT)	 AG	5105-5212	GT	AGG
-recovered Augustus_model.g40058.t1, initial, 2001, 2178
-recovered Augustus_model.g40058.t1, internal, 2990, 3027
-recovered Augustus_model.g40058.t1, internal, 4666, 4820
-recovered Augustus_model.g40058.t1, internal, 5105, 5212

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5392, 5598
Sorry, prediction snap_scaffold_582-snap.1-T1 fails validation.
(ATG)	 TG	2235-2316	GT	AGG
(GGA)	 AG	5018-5124	GT	CGG
(GGT)	 AG	5392-5598	GT	TGG
-recovered snap_scaffold_582-snap.1-T1, initial, 2235, 2316
-recovered snap_scaffold_582-snap.1-T1, internal, 5018, 5124
-recovered snap_scaffold_582-snap.1-T1, internal, 5392, 5598
Couldn't classify 5392, 5598
Sorry, prediction Augustus_model.g40057.t1 fails validation.
(ATG)	 CG	4989-5035	GT	AGG
(GGT)	 AG	5392-5598	GT	TGG
-recovered Augustus_model.g40057.t1, initial, 4989, 5035
-recovered Augustus_model.g40057.t1, internal, 5392, 5598
Valid prediction for snap_scaffold_582-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60513-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3387, rend_intergenic: 2001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5212, rend_intergenic: 3387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5621
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3387, rend_intergenic: 2001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5212, rend_intergenic: 3387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support