-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_58

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_58-snap.1-T1
Couldn't classify 5101, 5493
Sorry, prediction pasa_asmbl_46606.p1 fails validation.
(ATG)	 AG	5101-5493	CA	AGC
Valid prediction for HiQ_model.g39505.t1
Valid prediction for snap_scaffold_58-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59621-T1
Valid prediction for pasa_asmbl_46607.p1
Valid prediction for GlimmerHMM_glimmerT_59622-T1
Valid prediction for Augustus_model.g39504.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59625-T1
Valid prediction for snap_scaffold_58-snap.7-T1
Valid prediction for snap_scaffold_58-snap.4-T1
Valid prediction for snap_scaffold_58-snap.5-T1
Valid prediction for pasa_asmbl_46604.p1
Couldn't classify 2579, 3442
Sorry, prediction pasa_asmbl_46608.p1 fails validation.
(CCC)	 TA	2579-3442	CA	AAC
Valid prediction for GlimmerHMM_glimmerT_59626-T1
Valid prediction for snap_scaffold_58-snap.6-T1
Valid prediction for GlimmerHMM_glimmerT_59624-T1
Valid prediction for CodingQuarry_transcript_52552-T1
Valid prediction for Augustus_model.g39507.t1
Valid prediction for Augustus_model.g39506.t1
Valid prediction for GlimmerHMM_glimmerT_59623-T1
Valid prediction for snap_scaffold_58-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25756
-exon list size: 55


building trellis

1.8    
3.5    
5.3    
7.0    
8.8    
10.5    
12.3    
14.0    
15.8    
17.5    
19.3    
21.1    
22.8    
24.6    
26.3    
28.1    
29.8    
31.6    
33.3    
35.1    
36.8    
38.6    
40.4    
42.1    
43.9    
45.6    
47.4    
49.1    
50.9    
52.6    
54.4    
56.1    
57.9    
59.6    
61.4    
63.2    
64.9    
66.7    
68.4    
70.2    
71.9    
73.7    
75.4    
77.2    
78.9    
80.7    
82.5    
84.2    
86.0    
87.7    
89.5    
91.2    
93.0    
94.7    
96.5    
98.2    
-found 4 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support