-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_579

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 404, 549
Sorry, prediction Augustus_model.g40055.t1 fails validation.
(GAC)	 AG	404-549	GT	AGG
(AGG)	 AG	835-929	CT	AAC
-recovered Augustus_model.g40055.t1, terminal, 835, 929
-recovered Augustus_model.g40055.t1, internal, 404, 549
Valid prediction for snap_scaffold_579-snap.3-T1
Couldn't classify 5394, 5540
Sorry, prediction GlimmerHMM_glimmerT_60511-T1 fails validation.
(ATG)	 AA	339-549	GT	AGG
(CAG)	 AG	5394-5540	GT	AGG
-recovered GlimmerHMM_glimmerT_60511-T1, initial, 339, 549
-recovered GlimmerHMM_glimmerT_60511-T1, internal, 5394, 5540
Couldn't classify 404, 549
Sorry, prediction snap_scaffold_579-snap.1-T1 fails validation.
(GAC)	 AG	404-549	GT	AGG
(ATG)	 AG	1981-2030	TT	GAT
-recovered snap_scaffold_579-snap.1-T1, terminal, 1981, 2030
-recovered snap_scaffold_579-snap.1-T1, internal, 404, 549
Valid prediction for Augustus_model.g40056.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_579-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5439, rend_intergenic: 4146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5634
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 5439, rend_intergenic: 4146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support